Bo8g093060 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo8g093060 T031281_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.914 0.980
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.902 0.960
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.902 0.960
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.871 0.840
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.871 0.840
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.871 0.840
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.868 0.860
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.868 0.820
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.868 0.820
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.868 0.820
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.868 0.820
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.868 0.820
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.858 0.640
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.858 0.620
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.857 0.800
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g093060.1 bHLH 256 305

Links

Other bHLH family TFs
Other Brassica oleracea TFs

480 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11371 Aegilops tauschii F775_11371 I
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I
fgenesh2_kg.1__101__AT1G01260.1 Arabidopsis lyrata fgenesh2_kg.1__101__AT1G01260.1 I
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I
BHLH13 Arabidopsis thaliana AT1G01260 D
AT2G22750 Arabidopsis thaliana AT2G22750 D
BHLH25 Arabidopsis thaliana AT4G37850 I
Bostr.5325s0049 Boechera stricta Bostr.5325s0049 I
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I
BRADI2G47730 Brachypodium distachyon BRADI2G47730 I
BRADI4G00920 Brachypodium distachyon BRADI4G00920 I
Bo1g003350 Brassica oleracea Bo1g003350 I
Bo3g153150 Brassica oleracea Bo3g153150 I
Bo4g150960 Brassica oleracea Bo4g150960 I
Bo5g002590 Brassica oleracea Bo5g002590 I
Bra010617 Brassica rapa Bra010617 I
Bra011790 Brassica rapa Bra011790 I
Bra013128 Brassica rapa Bra013128 I
Bra030210 Brassica rapa Bra030210 I
Bra033273 Brassica rapa Bra033273 I
Bra039924 Brassica rapa Bra039924 I
PK09122.1 Cannabis sativa PK09122.1 I
PK11573.1 Cannabis sativa PK11573.1 I
Cagra.1968s0070 Capsella grandiflora Cagra.1968s0070 I
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I
Carubv10006834m.g Capsella rubella Carubv10006834m.g I
Carubv10008640m.g Capsella rubella Carubv10008640m.g I
Carubv10025041m.g Capsella rubella Carubv10025041m.g I
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I
Ca_02263 Cicer arietinum Ca_02263 I
Ca_02264 Cicer arietinum Ca_02264 I
Cla000123 Citrullus lanatus Cla000123 I
Cla008954 Citrullus lanatus Cla008954 I
Cla014288 Citrullus lanatus Cla014288 I
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I
Cucsa.103630 Cucumis sativus Cucsa.103630 I
Cucsa.218800 Cucumis sativus Cucsa.218800 I
Cucsa.321840 Cucumis sativus Cucsa.321840 I
Eucgr.E01043 Eucalyptus grandis Eucgr.E01043 I
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I
Eucgr.H02391 Eucalyptus grandis Eucgr.H02391 I
Eucgr.H02396 Eucalyptus grandis Eucgr.H02396 I
Eucgr.H02398 Eucalyptus grandis Eucgr.H02398 I
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I
Thhalv10007139m.g Eutrema salsugineum Thhalv10007139m.g I
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I
GLYMA01G40620 Glycine max GLYMA01G40620 I
GLYMA02G09670 Glycine max GLYMA02G09670 I
GLYMA05G23530 Glycine max GLYMA05G23530 I
GLYMA07G30420 Glycine max GLYMA07G30420 I
GLYMA08G06831 Glycine max GLYMA08G06831 I
GLYMA11G04690 Glycine max GLYMA11G04690 I
GLYMA17G16720 Glycine max GLYMA17G16720 I
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I
MLOC_64735 Hordeum vulgare MLOC_64735 I
MLOC_70409 Hordeum vulgare MLOC_70409 I
LPERR01G24170 Leersia perrieri LPERR01G24170 I
LPERR03G24050 Leersia perrieri LPERR03G24050 I
LPERR03G27220 Leersia perrieri LPERR03G27220 I
LPERR12G16560 Leersia perrieri LPERR12G16560 I
Lus10003488.g Linum usitatissimum Lus10003488.g I
Lus10011578.g Linum usitatissimum Lus10011578.g I
Lus10012457.g Linum usitatissimum Lus10012457.g I
Lus10019247.g Linum usitatissimum Lus10019247.g I
Lus10020503.g Linum usitatissimum Lus10020503.g I
Lus10039639.g Linum usitatissimum Lus10039639.g I
Lus10039640.g Linum usitatissimum Lus10039640.g I
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I
chr2.CM0021.440.nc Lotus japonicus chr2.CM0021.440.nc I
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I
MDP0000159571 Malus domestica MDP0000159571 I
MDP0000170202 Malus domestica MDP0000170202 I
MDP0000174149 Malus domestica MDP0000174149 I
MDP0000291132 Malus domestica MDP0000291132 I
MDP0000318216 Malus domestica MDP0000318216 I
MDP0000502440 Malus domestica MDP0000502440 I
cassava16019.m1 Manihot esculenta cassava16019.m1 I
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I
cassava20178.m1 Manihot esculenta cassava20178.m1 I
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I
MTR_5g014520 Medicago truncatula MTR_5g014520 I
MTR_5g014640 Medicago truncatula MTR_5g014640 I
GSMUA_Achr11G17840_001 Musa acuminata GSMUA_Achr11G17840_001 I
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I
GSMUA_Achr2G18140_001 Musa acuminata GSMUA_Achr2G18140_001 I
GSMUA_Achr3G26180_001 Musa acuminata GSMUA_Achr3G26180_001 I
GSMUA_Achr3G30620_001 Musa acuminata GSMUA_Achr3G30620_001 I
GSMUA_Achr4G03160_001 Musa acuminata GSMUA_Achr4G03160_001 I
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I
GSMUA_Achr7G04720_001 Musa acuminata GSMUA_Achr7G04720_001 I
GSMUA_Achr7G27600_001 Musa acuminata GSMUA_Achr7G27600_001 I
GSMUA_Achr8G05170_001 Musa acuminata GSMUA_Achr8G05170_001 I
GSMUA_Achr8G14720_001 Musa acuminata GSMUA_Achr8G14720_001 I
GSMUA_AchrUn_randomG02900_001 Musa acuminata GSMUA_AchrUn_randomG02900_001 I
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I
OBART01G28080 Oryza barthii OBART01G28080 I
OBART03G32580 Oryza barthii OBART03G32580 I
OBART12G19700 Oryza barthii OBART12G19700 I
OB03G36530 Oryza brachyantha OB03G36530 I
ORGLA01G0232100 Oryza glaberrima ORGLA01G0232100 I
ORGLA03G0269200 Oryza glaberrima ORGLA03G0269200 I
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I
ORGLA12G0170500 Oryza glaberrima ORGLA12G0170500 I
OGLUM01G32030 Oryza glumaepatula OGLUM01G32030 I
OGLUM03G29270 Oryza glumaepatula OGLUM03G29270 I
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I
OGLUM12G21470 Oryza glumaepatula OGLUM12G21470 I
BGIOSGA004292 Oryza indica BGIOSGA004292 I
BGIOSGA010080 Oryza indica BGIOSGA010080 I
BGIOSGA013493 Oryza indica BGIOSGA013493 I
BGIOSGA037855 Oryza indica BGIOSGA037855 I
OLONG_002504 Oryza longistaminata OLONG_002504 I
OLONG_017178 Oryza longistaminata OLONG_017178 I
OMERI03G25360 Oryza meridionalis OMERI03G25360 I
OMERI03G29350 Oryza meridionalis OMERI03G29350 I
OMERI12G15000 Oryza meridionalis OMERI12G15000 I
ONIVA01G32020 Oryza nivara ONIVA01G32020 I
ONIVA03G07570 Oryza nivara ONIVA03G07570 I
ONIVA03G34090 Oryza nivara ONIVA03G34090 I
OPUNC01G27950 Oryza punctata OPUNC01G27950 I
OPUNC03G26600 Oryza punctata OPUNC03G26600 I
OPUNC03G29750 Oryza punctata OPUNC03G29750 I
OPUNC12G17950 Oryza punctata OPUNC12G17950 I
ORUFI01G31210 Oryza rufipogon ORUFI01G31210 I
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I
ORUFI12G22050 Oryza rufipogon ORUFI12G22050 I
OS01G0705700 Oryza sativa OS01G0705700 I
OS03G0725800 Oryza sativa OS03G0725800 I
OS12G0632600 Oryza sativa OS12G0632600 I
Pavir.J01849 Panicum virgatum Pavir.J01849 I
Pavir.J12952 Panicum virgatum Pavir.J12952 I
Pavir.J35103 Panicum virgatum Pavir.J35103 I
Pavir.J39604 Panicum virgatum Pavir.J39604 I
PDK_20s1377121g004 Phoenix dactylifera PDK_20s1377121g004 I
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I
PDK_20s1524891g001 Phoenix dactylifera PDK_20s1524891g001 I
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I
PDK_20s1611511g001 Phoenix dactylifera PDK_20s1611511g001 I
estExt_fgenesh1_pg.C_310143 Physcomitrella patens estExt_fgenesh1_pg.C_310143 I
estExt_fgenesh1_pg.C_420092 Physcomitrella patens estExt_fgenesh1_pg.C_420092 I
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I
Pm002304 Prunus mume Pm002304 I
Pm002305 Prunus mume Pm002305 I
Pm021008 Prunus mume Pm021008 I
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I
28179.m000478 Ricinus communis 28179.m000478 I
28179.m000479 Ricinus communis 28179.m000479 I
29804.m001498 Ricinus communis 29804.m001498 I
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I
Si004795m.g Setaria italica Si004795m.g I
Si036393m.g Setaria italica Si036393m.g I
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I
Solyc02g091800.2 Solanum lycopersicum Solyc02g091800.2 I
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I
Sb01g009590 Sorghum bicolor Sb01g009590 I
Sb03g032420 Sorghum bicolor Sb03g032420 I
Sb08g022760 Sorghum bicolor Sb08g022760 I
TCM_000894 Theobroma cacao TCM_000894 I
TCM_000895 Theobroma cacao TCM_000895 I
TCM_006357 Theobroma cacao TCM_006357 I
TRAES3BF036800040CFD_g Triticum aestivum TRAES3BF036800040CFD_g I
TRAES3BF058400020CFD_g Triticum aestivum TRAES3BF058400020CFD_g I
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I
TRIUR3_26880 Triticum urartu TRIUR3_26880 I
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I
VIT_07s0205g00190 Vitis vinifera VIT_07s0205g00190 I
GRMZM2G019806 Zea mays GRMZM2G019806 I
GRMZM2G049686 Zea mays GRMZM2G049686 I
GRMZM2G068604 Zea mays GRMZM2G068604 I
GRMZM2G082343 Zea mays GRMZM2G082343 I
GRMZM2G159937 Zea mays GRMZM2G159937 I