Bra018896 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra018896 T031460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.914 1.000
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.914 1.000
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.867 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra018896.1-P bHLH 293 343

Links

Other bHLH family TFs
Other Brassica rapa TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_032040 Albugo laibachii ALNC14_032040 N
ENSBTAP00000044770-D1 Bos grunniens ENSBTAP00000044770-D1 I
HSF5 Bos taurus ENSBTAG00000001166 I
ENSBTAG00000033445 Bos taurus ENSBTAG00000033445 I
estExt_fgenesh2_pg.C_70302 Branchiostoma floridae estExt_fgenesh2_pg.C_70302 I
HSF5 Canis familiaris ENSCAFG00000017528 I
HSF5 Cavia porcellus ENSCPOG00000003431 I
HSF5 Dasypus novemcinctus ENSDNOG00000014871 I
e_gw1.2.1757.1 Fragilariopsis cylindrus e_gw1.2.1757.1 N
HSF5 Gallus gallus ENSGALG00000001031 I
HSF5 Gorilla gorilla ENSGGOG00000013788 I
HSF5 Homo sapiens ENSG00000176160 D
ENSSTOG00000020272 Ictidomys tridecemlineatus ENSSTOG00000020272 I
ENSLOCG00000002988 Lepisosteus oculatus ENSLOCG00000002988 I
ENSMEUG00000007286 Macropus eugenii ENSMEUG00000007286 I
Hsf5 Mus musculus ENSMUSG00000070345 I
HSF5 Pan troglodytes ENSPTRG00000009453 I
Phatr3_J43363 Phaeodactylum tricornutum Phatr3_J43363 N
Phatr3_J45392 Phaeodactylum tricornutum Phatr3_J45392 N
ENSPPYG00000008231 Pongo abelii ENSPPYG00000008231 I
HSF5 Procavia capensis ENSPCAG00000011323 I
HSF5 Sus scrofa ENSSSCG00000017641 I
ENSTRUG00000015486 Takifugu rubripes ENSTRUG00000015486 I