CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCF3 *(Echinops telfairi)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSETEG00000015388	T034070_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCF3 M02775_2.00	Homo sapiens	NVCACCTGBN	NVCAGGTGBN	SELEX Jolma et al.(2013) TCF3_1	0.914	1.000
TCF3 M08710_2.00	Homo sapiens	VVCASCTGCHN	NDGCAGSTGBB	Misc Kulakovskiy et al.(2013) TFE2_HUMAN.H11MO.0.A	0.914	1.000
TCF3 M09791_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E12_Q6	0.914	1.000
TCF3 M09792_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2A_Q6_01	0.914	1.000
TCF3 M09793_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2A_Q6_02	0.914	1.000
TCF3 M09794_2.00	Homo sapiens	VVVVMCACCTGCNBB	VVNGCAGGTGKBBBB	Transfac Matys et al.(2006) V$E47_01	0.914	1.000
TCF3 M09795_2.00	Homo sapiens	NNKWRCACCTGYDNNN	NNNHRCAGGTGYWMNN	Transfac Matys et al.(2006) V$E47_02	0.914	1.000
Tcf3 M09465_2.00	Mus musculus	ABWTCAAAGS	SCTTTGAWVT	Misc Heinz et al.(2010) mES-Tcf3_GSE11724	0.886	0.942
Tcf3 M09466_2.00	Mus musculus	VCAGCTGBNN	NNVCAGCTGB	Misc Heinz et al.(2010) proBcell-E2A_GSE21978	0.886	0.942
Tcf3 M09886_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E47_05	0.886	0.942
Tcf12 M01740_2.00	Mus musculus	NVCAYCTGB	VCAGRTGBN	PBM Weirauch et al.(2014) pTH5071	0.886	0.923
TCF12 M04137_2.00	Homo sapiens	VCACSTGB	VCASGTGB	SELEX Yin et al.(2017) TCF12_eDBD_HT-SELEX	0.886	0.923
Tcf12 M08062_2.00	Mus musculus	RRCAGCTGNNN	NNNCAGCTGYY	ChIP-seq Mathelier et al.(2014) MA0521.1	0.886	0.923
TCF12 M07805_2.00	Homo sapiens	NVDSCAGSTGB	VCASCTGSHBN	ChIP-seq Gerstein et al.(2012) GM12878_TCF12_HudsonAlpha	0.886	0.923
TCF12 M07806_2.00	Homo sapiens	VCASCTGB	VCAGSTGB	ChIP-seq Gerstein et al.(2012) H1-hESC_TCF12_HudsonAlpha	0.886	0.923
TCF12 M08731_2.00	Homo sapiens	CMCASCTGSH	DSCAGSTGKG	Misc Kulakovskiy et al.(2013) HTF4_HUMAN.H11MO.0.A	0.886	0.923
Tcf12 M08762_2.00	Mus musculus	VMCASCTGSH	DSCAGSTGKB	Misc Kulakovskiy et al.(2013) HTF4_MOUSE.H11MO.0.A	0.886	0.923
TCF12 M09458_2.00	Homo sapiens	NNVCAGCTGB	VCAGCTGBNN	Misc Heinz et al.(2010) GM12878-Tcf12_GSE32465	0.886	0.923
TCF12 M09858_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HEB_Q6	0.886	0.923
TCF12 M09859_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HTF4_Q2	0.886	0.923
TCF12 M09860_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_01	0.886	0.923
TCF12 M09861_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_03	0.886	0.923
TCF12 M09862_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_05	0.886	0.923
TCF12 M04138_2.00	Homo sapiens	NCAYCTGN	NCAGRTGN	SELEX Yin et al.(2017) TCF12_eDBD_Methyl-HT-SELEX	0.886	0.923
Tcf3 M00753_2.00	Mus musculus	VCACCTGBN	NVCAGGTGB	PBM Weirauch et al.(2013) pTH3866	0.886	0.846
Tcf3 M01723_2.00	Mus musculus	NNVCACSTGB	VCASGTGBNN	PBM Weirauch et al.(2014) pTH4580	0.886	0.846
Tcf3 M00118_2.00	Mus musculus	VCAYCTGB	VCAGRTGB	PBM Badis et al.(2009) Tcfe2a_3865	0.886	0.846
Tcf4 M01750_2.00	Mus musculus	VCAGVTGBN	NVCABCTGB	PBM Weirauch et al.(2014) pTH5101	0.884	0.885
TCF4 M02807_2.00	Homo sapiens	HRCACCTGBN	NVCAGGTGYD	SELEX Jolma et al.(2013) TCF4_1	0.884	0.885
TCF4 M02808_2.00	Homo sapiens	NVCACCTBBN	NVVAGGTGBN	SELEX Jolma et al.(2013) TCF4_2	0.884	0.885
TCF4 M02728_2.00	Homo sapiens	RCACCTG	CAGGTGY	SELEX Jolma et al.(2010) TCF4_dimer	0.884	0.885
TCF4 M04214_2.00	Homo sapiens	VCACCTGB	VCAGGTGB	SELEX Yin et al.(2017) TCF4_eDBD_HT-SELEX	0.884	0.885
Tcf4 M08775_2.00	Mus musculus	HRCACCTGB	VCAGGTGYD	Misc Kulakovskiy et al.(2013) ITF2_MOUSE.H11MO.0.B	0.884	0.885
TCF4 M09461_2.00	Homo sapiens	ASWTCAAAGRVN	NBYCTTTGAWST	Misc Heinz et al.(2010) Hct116-Tcf4_SRA012054	0.884	0.885
TCF4 M04215_2.00	Homo sapiens	VCACCTGN	NCAGGTGB	SELEX Yin et al.(2017) TCF4_eDBD_Methyl-HT-SELEX	0.884	0.885
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSETEP00000012476	bHLH	551	604	RRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLE

Links
Other bHLH family TFs
Other *Echinops telfairi* TFs

208 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g02144	Acanthocheilonema viteae	nAv.1.0.1.g02144	N	0.000
ANCCAN_02247	Ancylostoma caninum	ANCCAN_02247	N	0.000
ANCCAN_23216	Ancylostoma caninum	ANCCAN_23216	N	0.000
ANCCAN_24109	Ancylostoma caninum	ANCCAN_24109	N	0.000
ANCCEY_00668	Ancylostoma ceylanicum	ANCCEY_00668	N	0.000
ANCCEY_03736	Ancylostoma ceylanicum	ANCCEY_03736	N	0.000
ANCDUO_17699	Ancylostoma duodenale	ANCDUO_17699	N	0.000
ACAC_0001283001	Angiostrongylus cantonensis	ACAC_0001283001	N	0.000
ACAC_0001410501	Angiostrongylus cantonensis	ACAC_0001410501	N	0.000
ACOC_0000469401	Angiostrongylus costaricensis	ACOC_0000469401	N	0.000
ACOC_0000510301	Angiostrongylus costaricensis	ACOC_0000510301	N	0.000
Bm2582	Brugia malayi	Bm2582	N	0.000
Bm11274	Brugia malayi	Bm11274	N	0.000
BTMF_0001630801	Brugia timori	BTMF_0001630801	N	0.000
DICVIV_00659	Dictyocaulus viviparus	DICVIV_00659	N	0.000
DICVIV_09133	Dictyocaulus viviparus	DICVIV_09133	N	0.000
nDi.2.2.2.g11481	Dirofilaria immitis	nDi.2.2.2.g11481	N	0.000
EEL_0000830101	Elaeophora elaphi	EEL_0000830101	N	0.000
HCOI01806100	Haemonchus contortus	HCOI01806100	N	0.000
nLs.2.1.2.g07235	Litomosoides sigmodontis	nLs.2.1.2.g07235	N	0.000
LOAG_14115	Loa loa	LOAG_14115	N	0.000
NECAME_08826	Necator americanus	NECAME_08826	N	0.000
NECAME_13951	Necator americanus	NECAME_13951	N	0.000
OESDEN_12713	Oesophagostomum dentatum	OESDEN_12713	N	0.000
OFLC_0001102001	Onchocerca flexuosa	OFLC_0001102001	N	0.000
nOo.2.0.1.g08536	Onchocerca ochengi	nOo.2.0.1.g08536	N	0.000
WBGene00244893	Onchocerca volvulus	WBGene00244893	N	0.000
TELCIR_06949	Teladorsagia circumcincta	TELCIR_06949	N	0.000
TCLT_0000096701	Thelazia callipaeda	TCLT_0000096701	N	0.000

TCF3 (Echinops telfairi) bHLH

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

208 Related TFs

TCF3 **(Echinops telfairi)
bHLH**