TCF3 (Gallus gallus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGALG00000001093 T034482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.858 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.914 1.000
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.914 1.000
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.858 0.923
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.914 1.000
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.858 0.923
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.858 0.846
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.858 0.846
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.914 1.000
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.914 1.000
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.858 0.846
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.858 0.846
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.914 1.000
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.858 0.846
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.942
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.858 0.846
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.942
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.858 0.846
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.942
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.858 0.846
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.858 0.846
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.858 0.846
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.858 0.846
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.858 0.846
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.858 0.846
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.858 0.846
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.855 0.846
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.855 0.846
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.855 0.846
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.855 0.846
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.855 0.846
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.855 0.846
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.855 0.846
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.855 0.846
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000001635 bHLH 565 618
ENSGALP00000040388 bHLH 561 614

Links

Other bHLH family TFs
Other Gallus gallus TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g00204 Acanthocheilonema viteae nAv.1.0.1.g00204 N 0.000
nAv.1.0.1.g05049 Acanthocheilonema viteae nAv.1.0.1.g05049 I 0.000
ACYPI067723 Acyrthosiphon pisum ACYPI067723 I 0.000
ENSAPLG00000011062 Anas platyrhynchos ENSAPLG00000011062 I 0.000
ANCCAN_00245 Ancylostoma caninum ANCCAN_00245 I 0.000
ANCCEY_08415 Ancylostoma ceylanicum ANCCEY_08415 I 0.000
ANCDUO_04304 Ancylostoma duodenale ANCDUO_04304 I 0.000
ENSACAG00000013797 Anolis carolinensis ENSACAG00000013797 I 0.000
AALB001245 Anopheles albimanus AALB001245 I 0.000
AARA005848 Anopheles arabiensis AARA005848 I 0.000
ACHR005004 Anopheles christyi ACHR005004 I 0.000
ACHR007975 Anopheles christyi ACHR007975 I 0.000
ACUA006364 Anopheles culicifacies ACUA006364 I 0.000
ACUA016236 Anopheles culicifacies ACUA016236 I 0.000
ADIR009742 Anopheles dirus ADIR009742 I 0.000
AEPI007688 Anopheles epiroticus AEPI007688 I 0.000
AEPI009864 Anopheles epiroticus AEPI009864 I 0.000
AFAF020744 Anopheles farauti AFAF020744 I 0.000
AFUN002667 Anopheles funestus AFUN002667 I 0.000
AFUN004920 Anopheles funestus AFUN004920 I 0.000
AMAM010839 Anopheles maculatus AMAM010839 I 0.000
AMAM022462 Anopheles maculatus AMAM022462 I 0.000
AMEM005969 Anopheles merus AMEM005969 I 0.000
AMIN006554 Anopheles minimus AMIN006554 I 0.000
AQUA000003 Anopheles quadriannulatus AQUA000003 I 0.000
AQUA006727 Anopheles quadriannulatus AQUA006727 I 0.000
ASU_08111 Ascaris suum ASU_08111 I 0.000
ENSAMXG00000010055 Astyanax mexicanus ENSAMXG00000010055 I 0.000
ENSAMXG00000021103 Astyanax mexicanus ENSAMXG00000021103 I 0.000
ACEP15305 Atta cephalotes ACEP15305 I 0.000
ACEP19559 Atta cephalotes ACEP19559 I 0.000
BGLB009051 Biomphalaria glabrata BGLB009051 I 0.000
BGIBMGA009546 Bombyx mori BGIBMGA009546 I 0.000
Bm3369 Brugia malayi Bm3369 I 0.000
BTMF_0001218901 Brugia timori BTMF_0001218901 I 0.000
BTMF_0001220401 Brugia timori BTMF_0001220401 N 0.000
Brh_R002767 Buceros rhinoceros Brh_R002767 I 0.000
CBG04483 Caenorhabditis briggsae CBG04483 I 0.000
vab-3 Caenorhabditis elegans WBGene00006870 I 0.000
CJA11736 Caenorhabditis japonica CJA11736 I 0.000
Cflo_06474--XP_394848.3_APIME Camponotus floridanus Cflo_06474--XP_394848.3_APIME I 0.000
CapteG228124 Capitella teleta CapteG228124 I 0.000
Cmyd_10010531 Chelonia mydas Cmyd_10010531 I 0.000
PAX6 Choloepus hoffmanni ENSCHOG00000001954 I 0.000
CLEC008732 Cimex lectularius CLEC008732 I 0.000
CLEC009744 Cimex lectularius CLEC009744 I 0.000
pax3/7-like Ciona intestinalis ENSCING00000013561 I 0.000
ENSCSAVG00000005353 Ciona savignyi ENSCSAVG00000005353 I 0.000
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I 0.000
CpipJ_CPIJ014198 Culex pipiens CpipJ_CPIJ014198 I 0.000
CPIJ014198 Culex quinquefasciatus CPIJ014198 I 0.000
CGOC_0000172601 Cylicostephanus goldi CGOC_0000172601 I 0.000
KGM_00017 Danaus plexippus KGM_00017 I 0.000
KGM_18864 Danaus plexippus KGM_18864 I 0.000
pax10 Danio rerio ENSDARG00000053364 I 0.000
DAPPUDRAFT_9094 Daphnia pulex DAPPUDRAFT_9094 I 0.000
YQE_05108 Dendroctonus ponderosae YQE_05108 I 0.000
YQE_06850 Dendroctonus ponderosae YQE_06850 I 0.000
YQE_12757 Dendroctonus ponderosae YQE_12757 I 0.000
YQE_12760 Dendroctonus ponderosae YQE_12760 I 0.000
DICVIV_11711 Dictyocaulus viviparus DICVIV_11711 I 0.000
DILT_0000408901 Diphyllobothrium latum DILT_0000408901 N 0.000
Pax3 Dipodomys ordii ENSDORG00000010324 I 0.000
nDi.2.2.2.g03676 Dirofilaria immitis nDi.2.2.2.g03676 I 0.000
ey Drosophila melanogaster FBgn0005558 D 0.000
ECPE_0000989001 Echinostoma caproni ECPE_0000989001 I 0.000
EEL_0000119001 Elaeophora elaphi EEL_0000119001 N 0.000
EVEC_0000950501 Enterobius vermicularis EVEC_0000950501 I 0.000
PAX6 Erinaceus europaeus ENSEEUG00000014014 I 0.000
D915_05710 Fasciola hepatica D915_05710 I 0.000
ENSGMOG00000007260 Gadus morhua ENSGMOG00000007260 I 0.000
pax10 Gasterosteus aculeatus ENSGACG00000007835 I 0.000
GPUH_0000746301 Gongylonema pulchrum GPUH_0000746301 I 0.000
HPLM_0000341801 Haemonchus placei HPLM_0000341801 I 0.000
HHAL001220-PA Halyomorpha halys HHAL001220-PA I 0.000
HHAL002779-PA Halyomorpha halys HHAL002779-PA I 0.000
HMEL012214 Heliconius melpomene HMEL012214 I 0.000
Hba_09393 Heterorhabditis bacteriophora Hba_09393 N 0.000
ENSLOCG00000017168 Lepisosteus oculatus ENSLOCG00000017168 I 0.000
LDEC009603 Leptinotarsa decemlineata LDEC009603 I 0.000
LDEC011614 Leptinotarsa decemlineata LDEC011614 I 0.000
nLs.2.1.2.g01340 Litomosoides sigmodontis nLs.2.1.2.g01340 I 0.000
LOAG_18403 Loa loa LOAG_18403 I 0.000
LotgiG80560 Lottia gigantea LotgiG80560 I 0.000
LCUP011798 Lucilia cuprina LCUP011798 I 0.000
LCUP013026 Lucilia cuprina LCUP013026 I 0.000
LCUP015672 Lucilia cuprina LCUP015672 I 0.000
LLOJ006069 Lutzomyia longipalpis LLOJ006069 I 0.000
MESCA001873 Megaselia scalaris MESCA001873 I 0.000
ENSMGAG00000001533 Meleagris gallopavo ENSMGAG00000001533 I 0.000
ENSMGAG00000004645 Meleagris gallopavo ENSMGAG00000004645 I 0.000
maker-nMf.1.1.scaf02133-snap-gene-0.11 Meloidogyne floridensis maker-nMf.1.1.scaf02133-snap-gene-0.11 N 0.000
maker-nMf.1.1.scaf03862-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf03862-augustus-gene-0.3 N 0.000
Pax6 Mus musculus ENSMUSG00000027168 D 0.000
ENSMLUG00000002244 Myotis lucifugus ENSMLUG00000002244 I 0.000
NECAME_04523 Necator americanus NECAME_04523 I 0.000
NEMVEDRAFT_v1g119152 Nematostella vectensis NEMVEDRAFT_v1g119152 I 0.000
NEMVEDRAFT_v1g136480 Nematostella vectensis NEMVEDRAFT_v1g136480 D 0.000
NBR_0001845501 Nippostrongylus brasiliensis NBR_0001845501 I 0.000
Ocbimv22007835m.g Octopus bimaculoides Ocbimv22007835m.g I 0.000
Ocbimv22021713m.g Octopus bimaculoides Ocbimv22021713m.g I 0.000
OESDEN_03125 Oesophagostomum dentatum OESDEN_03125 I 0.000
SNAPOd2T00015303001 Oikopleura dioica SNAPOd2T00015303001 I 0.000
OFLC_0000197901 Onchocerca flexuosa OFLC_0000197901 I 0.000
OFLC_0001260901 Onchocerca flexuosa OFLC_0001260901 N 0.000
nOo.2.0.1.g04238 Onchocerca ochengi nOo.2.0.1.g04238 N 0.000
nOo.2.0.1.g09807 Onchocerca ochengi nOo.2.0.1.g09807 I 0.000
WBGene00241133 Onchocerca volvulus WBGene00241133 I 0.000
WBGene00247364 Onchocerca volvulus WBGene00247364 N 0.000
ENSONIG00000020082 Oreochromis niloticus ENSONIG00000020082 I 0.000
PHUM217100 Pediculus humanus PHUM217100 I 0.000
PPAI007516 Phlebotomus papatasi PPAI007516 I 0.000
ENSPFOG00000004477 Poecilia formosa ENSPFOG00000004477 I 0.000
ENSPPYG00000029808 Pongo abelii ENSPPYG00000029808 I 0.000
Ppa-ceh-8 Pristionchus pacificus PPA03443 I 0.000
PRRX1 Pteropus vampyrus ENSPVAG00000007390 N 0.000
nRc.2.0.1.g25805 Romanomermis culicivorax nRc.2.0.1.g25805 I 0.000
nRc.2.0.1.g45424 Romanomermis culicivorax nRc.2.0.1.g45424 N 0.000
A_02894 Schistosoma haematobium A_02894 N 0.000
A_06809 Schistosoma haematobium A_06809 I 0.000
Smp_142440 Schistosoma mansoni Smp_142440 N 0.000
SMTD_0001329401 Schistosoma mattheei SMTD_0001329401 I 0.000
SROB_0000988801 Schistosoma rodhaini SROB_0000988801 I 0.000
SINV15875 Solenopsis invicta SINV15875 I 0.000
SPER_0001490801 Spirometra erinaceieuropaei SPER_0001490801 N 0.000
SPER_0001521401 Spirometra erinaceieuropaei SPER_0001521401 N 0.000
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.000
L889_g29911 Steinernema feltiae L889_g29911 I 0.000
L893_g1042 Steinernema glaseri L893_g1042 I 0.000
L898_g33070 Steinernema monticolum L898_g33070 I 0.000
SMAR006838 Strigamia maritima SMAR006838 I 0.000
SPU_006787 Strongylocentrotus purpuratus SPU_006787 I 0.000
SMUV_0001111201 Syphacia muris SMUV_0001111201 I 0.000
TELCIR_00312 Teladorsagia circumcincta TELCIR_00312 I 0.000
ENSTNIG00000000660 Tetraodon nigroviridis ENSTNIG00000000660 N 0.000
TCLT_0000211001 Thelazia callipaeda TCLT_0000211001 I 0.000
TRE_0000697601 Trichobilharzia regenti TRE_0000697601 I 0.000
Tal_R002183 Tyto alba Tal_R002183 I 0.000
Tal_R002397 Tyto alba Tal_R002397 I 0.000
PAX3 Vicugna pacos ENSVPAG00000000715 I 0.000
WUBG_04585 Wuchereria bancrofti WUBG_04585 I 0.000
XP_002938577 Xenopus tropicalis XP_002938577 I 0.000
ENSXMAG00000017245 Xiphophorus maculatus ENSXMAG00000017245 I 0.000