TCF12 (Gallus gallus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGALG00000004304 T034491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.914 1.000
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.914 1.000
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.914 1.000
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.914 1.000
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.914 1.000
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.914 1.000
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.914 1.000
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.914 1.000
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.914 1.000
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.914 1.000
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.914 1.000
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.914 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.914 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.914 0.885
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.912 0.962
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.912 0.962
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.912 0.962
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.912 0.962
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.912 0.962
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.912 0.962
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.912 0.962
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.962
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.962
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.962
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.923
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.923
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.923
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.923
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.923
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.923
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000006977 bHLH 627 680
ENSGALP00000033775 bHLH 498 551

Links

Other bHLH family TFs
Other Gallus gallus TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00215g416 Arthrobotrys oligospora AOL_s00215g416 N
ARB_01120 Arthroderma benhamiae ARB_01120 N
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N
AUEXF2481DRAFT_65216 Aureobasidium subglaciale AUEXF2481DRAFT_65216 N
COCC4DRAFT_202082 Bipolaris maydis COCC4DRAFT_202082 N
COCMIDRAFT_98420 Bipolaris oryzae COCMIDRAFT_98420 N
COCSADRAFT_314350 Bipolaris sorokiniana COCSADRAFT_314350 N
COCVIDRAFT_111354 Bipolaris victoriae COCVIDRAFT_111354 N
COCCADRAFT_88010 Bipolaris zeicola COCCADRAFT_88010 N
BDDG_08162 Blastomyces dermatitidis BDDG_08162 N
Bcin07g06120 Botrytis cinerea Bcin07g06120 N
PVAR5_4548 Byssochlamys spectabilis PVAR5_4548 N
A1O1_02509 Capronia coronata A1O1_02509 N
A1O1_00801 Capronia coronata A1O1_00801 I
A1O3_02841 Capronia epimyces A1O3_02841 I
A1O3_00914 Capronia epimyces A1O3_00914 N
PV04_05279 Capronia semiimmersa PV04_05279 I
PV04_08823 Capronia semiimmersa PV04_08823 N
Z519_01916 Cladophialophora bantiana Z519_01916 N
G647_07244 Cladophialophora carrionii G647_07244 N
G647_04666 Cladophialophora carrionii G647_04666 I
PV07_00882 Cladophialophora immunda PV07_00882 N
A1O5_01498 Cladophialophora psammophila A1O5_01498 N
A1O7_08287 Cladophialophora yegresii A1O7_08287 N
A1O7_04026 Cladophialophora yegresii A1O7_04026 I
CIMG_08163 Coccidioides immitis CIMG_08163 N
CPC735_021860 Coccidioides posadasii CPC735_021860 N
estExt_Genewise1Plus.C_230145 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_230145 N
W97_07490 Coniosporium apollinis W97_07490 N
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N
H072_9547 Dactylellina haptotyla H072_9547 N
DOTSEDRAFT_75761 Dothistroma septosporum DOTSEDRAFT_75761 N
DRE_04581 Drechslerella stenobrocha DRE_04581 N
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N
HMPREF1120_06404 Exophiala dermatitidis HMPREF1120_06404 N
PV10_04925 Exophiala mesophila PV10_04925 N
PV10_00514 Exophiala mesophila PV10_00514 I
PV06_09822 Exophiala oligosperma PV06_09822 N
PV11_02484 Exophiala sideris PV11_02484 N
PV08_08880 Exophiala spinifera PV08_08880 N
PV05_01304 Exophiala xenobiotica PV05_01304 N
PV05_00997 Exophiala xenobiotica PV05_00997 N
Z517_11712 Fonsecaea pedrosoi Z517_11712 I
Z517_05164 Fonsecaea pedrosoi Z517_05164 N
HCBG_04319 Histoplasma capsulatum HCBG_04319 N
LEMA_P059350.1 Leptosphaeria maculans LEMA_P059350.1 N
MPH_07157 Macrophomina phaseolina MPH_07157 N
MGG_01776 Magnaporthe oryzae MGG_01776 I
MBM_01735 Marssonina brunnea MBM_01735 I
MGYG_07575 Microsporum gypseum MGYG_07575 N
e_gw1.11.374.1 Mycosphaerella fijiensis e_gw1.11.374.1 N
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N
OIDMADRAFT_140709 Oidiodendron maius OIDMADRAFT_140709 I
PDE_02184 Penicillium oxalicum PDE_02184 N
PFICI_04450 Pestalotiopsis fici PFICI_04450 I
SNOG_12578 Phaeosphaeria nodorum SNOG_12578 N
MYCFIDRAFT_190439 Pseudocercospora fijiensis MYCFIDRAFT_190439 N
GMDG_04017 Pseudogymnoascus destructans GMDG_04017 I
V499_02646 Pseudogymnoascus pannorum V499_02646 I
PTT_14634 Pyrenophora teres PTT_14634 N
PTRG_11331 Pyrenophora triticirepentis PTRG_11331 N
Z518_10852 Rhinocladiella mackenziei Z518_10852 N
Z518_10184 Rhinocladiella mackenziei Z518_10184 I
SETTUDRAFT_164235 Setosphaeria turcica SETTUDRAFT_164235 N
SEPMUDRAFT_163291 Sphaerulina musiva SEPMUDRAFT_163291 N
SNOG_12578 Stagonospora nodorum SNOG_12578 N
TEQG_07260 Trichophyton equinum TEQG_07260 N
H101_04104 Trichophyton interdigitale H101_04104 N
H102_03320 Trichophyton rubrum H102_03320 N
H105_03339 Trichophyton soudanense H105_03339 N
TESG_03991 Trichophyton tonsurans TESG_03991 N
TRV_02239 Trichophyton verrucosum TRV_02239 N
GSTUM_00002483001 Tuber melanosporum GSTUM_00002483001 N
PV09_03074 Verruconis gallopava PV09_03074 N