usf1 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000015402 T036453_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.876 0.870
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.876 0.870
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.876 0.870
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.876 0.870
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.876 0.870
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.876 0.870
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.876 0.870
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.876 0.870
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.876 0.870
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.876 0.870
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.876 0.870
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.876 0.870
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.876 0.870
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000019280 bHLH 210 265

Links

Other bHLH family TFs
Other Oryzias latipes TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00083g463 Arthrobotrys oligospora AOL_s00083g463 I
ARB_05394 Arthroderma benhamiae ARB_05394 N
MCYG_00678 Arthroderma otae MCYG_00678 N
e_gw1.00866.172.1 Aspergillus carbonarius e_gw1.00866.172.1 I
ACLA_039140 Aspergillus clavatus CADACLAG00003633 N
CADAFLAG00002515 Aspergillus flavus CADAFLAG00002515 I
AFUA_3G11250 Aspergillus fumigatus CADAFUAG00005698 I
ANIA_04873 Aspergillus nidulans CADANIAG00005532 I
CADANGAG00002216 Aspergillus niger CADANGAG00002216 I
CADAORAG00001279 Aspergillus oryzae CADAORAG00001279 I
EURHEDRAFT_515807 Aspergillus ruber EURHEDRAFT_515807 I
ATEG_04658 Aspergillus terreus CADATEAG00009335 I
Bcin02g07540 Botrytis cinerea Bcin02g07540 I
PVAR5_7714 Byssochlamys spectabilis PVAR5_7714 I
A1O1_03114 Capronia coronata A1O1_03114 I
A1O3_01974 Capronia epimyces A1O3_01974 I
PV04_04915 Capronia semiimmersa PV04_04915 I
CTHT_0018750 Chaetomium thermophilum CTHT_0018750 I
Z519_10261 Cladophialophora bantiana Z519_10261 I
G647_04328 Cladophialophora carrionii G647_04328 I
A1O5_03439 Cladophialophora psammophila A1O5_03439 I
A1O7_04367 Cladophialophora yegresii A1O7_04367 I
CPUR_04347 Claviceps purpurea CPUR_04347 I
CIMG_03820 Coccidioides immitis CIMG_03820 N
CPC735_005020 Coccidioides posadasii CPC735_005020 N
HMPREF1541_09309 Cyphellophora europaea HMPREF1541_09309 I
H072_10673 Dactylellina haptotyla H072_10673 I
EPUS_07921 Endocarpon pusillum EPUS_07921 I
EV44_g6127 Erysiphe necator EV44_g6127 I
A1O9_00612 Exophiala aquamarina A1O9_00612 I
HMPREF1120_06603 Exophiala dermatitidis HMPREF1120_06603 I
PV10_00143 Exophiala mesophila PV10_00143 I
PV06_04279 Exophiala oligosperma PV06_04279 I
PV11_04194 Exophiala sideris PV11_04194 I
PV08_10349 Exophiala spinifera PV08_10349 I
PV05_09372 Exophiala xenobiotica PV05_09372 I
Z517_12080 Fonsecaea pedrosoi Z517_12080 I
MBM_04034 Marssonina brunnea MBM_04034 I
MCYG_00678 Microsporum canis MCYG_00678 N
MGYG_01294 Microsporum gypseum MGYG_01294 N
MYCTH_2308260 Myceliophthora thermophila MYCTH_2308260 I
NFIA_066040 Neosartorya fischeri CADNFIAG00006379 I
NCU06907 Neurospora crassa NCU06907 D
estExt_fgenesh2_pg.C_80281 Neurospora discreta estExt_fgenesh2_pg.C_80281 I
NEUTE1DRAFT_130988 Neurospora tetrasperma NEUTE1DRAFT_130988 I
OIDMADRAFT_103771 Oidiodendron maius OIDMADRAFT_103771 I
F503_03781 Ophiostoma piceae uamh F503_03781 I
PABG_02567 Paracoccidioides brasiliensis PABG_02567 N
Pc13g09500 Penicillium chrysogenum Pc13g09500 N
PDIP_29800 Penicillium digitatum PDIP_29800 N
PEX1_090700 Penicillium expansum PEX1_090700 N
PITC_062120 Penicillium italicum PITC_062120 N
PMAA_023500 Penicillium marneffei PMAA_023500 N
PDE_04896 Penicillium oxalicum PDE_04896 N
PCH_Pc13g09500 Penicillium rubens PCH_Pc13g09500 N
U727_00433320351 Penicillium solitum U727_00433320351 N
PODANS_5_11890 Podospora anserina PODANS_5_11890 I
GMDG_06980 Pseudogymnoascus destructans GMDG_06980 I
V499_09093 Pseudogymnoascus pannorum V499_09093 I
Z518_09813 Rhinocladiella mackenziei Z518_09813 I
SBOR_8019 Sclerotinia borealis SBOR_8019 I
SMAC_05878 Sordaria macrospora SMAC_05878 I
PMAA_023500 Talaromyces marneffei PMAA_023500 N
TSTA_031880 Talaromyces stipitatus TSTA_031880 N
THITE_2117700 Thielavia terrestris THITE_2117700 I
TEQG_05544 Trichophyton equinum TEQG_05544 N
H101_04757 Trichophyton interdigitale H101_04757 N
H102_07608 Trichophyton rubrum H102_07608 N
H105_07634 Trichophyton soudanense H105_07634 N
TESG_05703 Trichophyton tonsurans TESG_05703 N
TRV_03376 Trichophyton verrucosum TRV_03376 N
GSTUM_00007462001 Tuber melanosporum GSTUM_00007462001 I