clocka (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000001837 T037821_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 0.920
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 0.920
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 0.920
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 0.920
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 0.920
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 0.920
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 0.920
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004233 bHLH 37 86
ENSTRUP00000004234 bHLH 37 86
ENSTRUP00000004235 bHLH 26 75
ENSTRUP00000004236 bHLH 20 69
ENSTRUP00000004237 bHLH 25 74

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000001470 Ailuropoda melanoleuca ENSAMEG00000001470 I
ENSBTAP00000025999-D1 Bos grunniens ENSBTAP00000025999-D1 I
ZNF513 Bos taurus ENSBTAG00000019518 I
ZNF513 Callithrix jacchus ENSCJAG00000000995 I
ZNF513 Canis familiaris ENSCAFG00000004909 I
ZNF513 Cavia porcellus ENSCPOG00000002437 I
ENSCSAG00000009842 Chlorocebus sabaeus ENSCSAG00000009842 I
Zfp513 Dipodomys ordii ENSDORG00000006783 I
ZNF513 Equus caballus ENSECAG00000008865 I
ZNF513 Felis catus ENSFCAG00000021914 I
ZNF513 Gorilla gorilla ENSGGOG00000010998 I
ZNF513 Homo sapiens ENSG00000163795 D
ENSSTOG00000011385 Ictidomys tridecemlineatus ENSSTOG00000011385 I
ZNF513 Loxodonta africana ENSLAFG00000005599 I
ENSMMUP00000010867 Macaca fascicularis ENSMMUP00000010867 I
ENSMMUG00000008292 Macaca mulatta ENSMMUG00000008292 I
ENSMEUG00000001509 Macropus eugenii ENSMEUG00000001509 I
ZNF513 Microcebus murinus ENSMICG00000015886 I
ZNF513 Monodelphis domestica ENSMODG00000015649 I
ENSMPUG00000009786 Mustela putorius furo ENSMPUG00000009786 I
Zfp513 Mus musculus ENSMUSG00000043059 I
Myotis_brandtii_ZNF513_10031178 Myotis brandtii Myotis_brandtii_ZNF513_10031178 I
ZNF513 Myotis lucifugus ENSMLUG00000001385 I
ZNF513 Oryctolagus cuniculus ENSOCUG00000017096 I
ZNF513 Otolemur garnettii ENSOGAG00000012356 I
ENSOARG00000019302 Ovis aries ENSOARG00000019302 I
ZNF513 Pan troglodytes ENSPTRG00000011767 I
ENSPANG00000000951 Papio anubis ENSPANG00000000951 I
ENSPPYG00000012548 Pongo abelii ENSPPYG00000012548 I
ZNF513 Pteropus vampyrus ENSPVAG00000015193 I
Zfp513 Rattus norvegicus ENSRNOG00000005298 I
ENSSHAG00000013585 Sarcophilus harrisii ENSSHAG00000013585 I
ZNF513 Tupaia belangeri ENSTBEG00000013808 I