tcf3a (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000008147 T037860_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.888 0.846
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.888 0.846
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.888 0.846
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.860 0.846
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.860 0.846
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.860 0.846
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.860 0.846
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.860 0.846
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.860 0.846
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.860 0.846
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.860 0.827
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.860 0.827
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.860 0.827
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.860 0.827
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.860 0.827
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.860 0.827
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.860 0.827
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.860 0.827
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.860 0.827
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.860 0.827
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.860 0.827
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.860 0.827
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.860 0.788
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.860 0.788
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.860 0.788
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.788
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.788
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.788
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.788
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.788
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.788
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.788
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000020355 bHLH 553 606
ENSTRUP00000020356 bHLH 190 248
ENSTRUP00000020357 bHLH 536 589
ENSTRUP00000020358 bHLH 514 567
ENSTRUP00000020359 bHLH 514 567
ENSTRUP00000020360 bHLH 513 566
ENSTRUP00000020361 bHLH 497 550
ENSTRUP00000020362 bHLH 415 468
ENSTRUP00000020363 bHLH 35 88

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

205 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_050430 Acremonium chrysogenum ACRE_050430 I
AB04255.1 Alternaria brassicicola AB04255.1 I
AOL_s00004g467 Arthrobotrys oligospora AOL_s00004g467 I
ACLA_075180 Aspergillus clavatus CADACLAG00007213 I
AFUA_2G16230 Aspergillus fumigatus CADAFUAG00003956 I
EURHEDRAFT_452938 Aspergillus ruber EURHEDRAFT_452938 I
ATEG_02323 Aspergillus terreus CADATEAG00000176 I
M437DRAFT_51622 Aureobasidium melanogenum M437DRAFT_51622 I
M438DRAFT_264300 Aureobasidium pullulans M438DRAFT_264300 I
AUEXF2481DRAFT_65039 Aureobasidium subglaciale AUEXF2481DRAFT_65039 I
BAUCODRAFT_67300 Baudoinia compniacensis BAUCODRAFT_67300 I
BBA_06378 Beauveria bassiana BBA_06378 I
COCC4DRAFT_73623 Bipolaris maydis COCC4DRAFT_73623 I
COCMIDRAFT_83159 Bipolaris oryzae COCMIDRAFT_83159 I
COCSADRAFT_317847 Bipolaris sorokiniana COCSADRAFT_317847 I
COCVIDRAFT_108446 Bipolaris victoriae COCVIDRAFT_108446 I
COCCADRAFT_3280 Bipolaris zeicola COCCADRAFT_3280 I
BGHDH14_bgh03672 Blumeria graminis BGHDH14_bgh03672 I
Bcin08g04290 Botrytis cinerea Bcin08g04290 I
PVAR5_0273 Byssochlamys spectabilis PVAR5_0273 I
A1O1_09148 Capronia coronata A1O1_09148 I
A1O3_04858 Capronia epimyces A1O3_04858 I
PV04_09644 Capronia semiimmersa PV04_09644 I
CHGG_03330 Chaetomium globosum CHGG_03330 I
CTHT_0023000 Chaetomium thermophilum CTHT_0023000 I
Z519_11455 Cladophialophora bantiana Z519_11455 I
G647_08016 Cladophialophora carrionii G647_08016 I
PV07_00073 Cladophialophora immunda PV07_00073 I
A1O5_10914 Cladophialophora psammophila A1O5_10914 I
A1O7_09058 Cladophialophora yegresii A1O7_09058 I
CPUR_06134 Claviceps purpurea CPUR_06134 I
CIMG_09513 Coccidioides immitis CIMG_09513 I
CPC735_018720 Coccidioides posadasii CPC735_018720 I
estExt_fgenesh1_pm.C_180056 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_180056 I
CFIO01_12195 Colletotrichum fioriniae CFIO01_12195 I
GLRG_08419 Colletotrichum graminicola GLRG_08419 I
CH063_10005 Colletotrichum higginsianum CH063_10005 I
W97_08751 Coniosporium apollinis W97_08751 I
CCM_05770 Cordyceps militaris CCM_05770 I
HMPREF1541_03882 Cyphellophora europaea HMPREF1541_03882 I
H072_7005 Dactylellina haptotyla H072_7005 I
DOTSEDRAFT_69945 Dothistroma septosporum DOTSEDRAFT_69945 I
EPUS_05737 Endocarpon pusillum EPUS_05737 I
EV44_g1012 Erysiphe necator EV44_g1012 I
A1O9_08540 Exophiala aquamarina A1O9_08540 I
HMPREF1120_01035 Exophiala dermatitidis HMPREF1120_01035 I
PV10_05179 Exophiala mesophila PV10_05179 I
PV06_07387 Exophiala oligosperma PV06_07387 I
PV11_03237 Exophiala sideris PV11_03237 I
PV08_01606 Exophiala spinifera PV08_01606 I
PV05_00271 Exophiala xenobiotica PV05_00271 I
Z517_01898 Fonsecaea pedrosoi Z517_01898 I
FFUJ_08525 Fusarium fujikuroi FFUJ_08525 I
FGRRES_05399 Fusarium graminearum FGRRES_05399 I
FOXG_09505 Fusarium oxysporum FOXG_09505 I
FPSE_09315 Fusarium pseudograminearum FPSE_09315 I
NechaG62953 Fusarium solani NechaG62953 I
FVEG_07130 Fusarium verticillioides FVEG_07130 I
GGTG_12899 Gaeumannomyces graminis GGTG_12899 I
CMQ_4569 Grosmannia clavigera CMQ_4569 I
LEMA_P107430.1 Leptosphaeria maculans LEMA_P107430.1 I
MPH_05791 Macrophomina phaseolina MPH_05791 I
MGG_00373 Magnaporthe oryzae MGG_00373 I
MAPG_00573 Magnaporthe poae MAPG_00573 I
MBM_02119 Marssonina brunnea MBM_02119 I
MYCTH_2305142 Myceliophthora thermophila MYCTH_2305142 I
estExt_Genewise1.C_160187 Mycosphaerella fijiensis estExt_Genewise1.C_160187 I
e_gw1.10.63.1 Mycosphaerella graminicola e_gw1.10.63.1 I
estExt_Genewise1.C_sca_10_chr8_2_00756 Nectria haematococca estExt_Genewise1.C_sca_10_chr8_2_00756 I
UCRNP2_4875 Neofusicoccum parvum UCRNP2_4875 I
NFIA_091480 Neosartorya fischeri CADNFIAG00006628 I
NCU06503 Neurospora crassa NCU06503 D
estExt_fgenesh2_pg.C_50693 Neurospora discreta estExt_fgenesh2_pg.C_50693 I
OIDMADRAFT_116081 Oidiodendron maius OIDMADRAFT_116081 I
OCS_04386 Ophiocordyceps sinensis OCS_04386 I
F503_02900 Ophiostoma piceae uamh F503_02900 I
Pc21g01800 Penicillium chrysogenum Pc21g01800 I
PEX1_034950 Penicillium expansum PEX1_034950 I
PITC_083090 Penicillium italicum PITC_083090 I
PMAA_038080 Penicillium marneffei PMAA_038080 I
PDE_07758 Penicillium oxalicum PDE_07758 I
PCH_Pc21g01800 Penicillium rubens PCH_Pc21g01800 I
U727_00430142121 Penicillium solitum U727_00430142121 I
PFICI_05888 Pestalotiopsis fici PFICI_05888 I
PODANS_7_7860 Podospora anserina PODANS_7_7860 I
MYCFIDRAFT_202252 Pseudocercospora fijiensis MYCFIDRAFT_202252 I
GMDG_04891 Pseudogymnoascus destructans GMDG_04891 I
PTT_11782 Pyrenophora teres PTT_11782 I
PTRG_05513 Pyrenophora triticirepentis PTRG_05513 I
Z518_03210 Rhinocladiella mackenziei Z518_03210 I
SAPIO_CDS5390 Scedosporium apiospermum SAPIO_CDS5390 I
SBOR_3205 Sclerotinia borealis SBOR_3205 I
SS1G_03115 Sclerotinia sclerotiorum SS1G_03115 I
SMAC_05337 Sordaria macrospora SMAC_05337 I
SEPMUDRAFT_147252 Sphaerulina musiva SEPMUDRAFT_147252 I
SPBR_00205 Sporothrix brasiliensis SPBR_00205 I
HMPREF1624_05990 Sporothrix schenckii HMPREF1624_05990 I
S40288_00174 Stachybotrys chartarum S40288_00174 I
S40285_00403 Stachybotrys chlorohalonata S40285_00403 I
PMAA_038080 Talaromyces marneffei PMAA_038080 I
TSTA_053940 Talaromyces stipitatus TSTA_053940 I
THITE_2118864 Thielavia terrestris THITE_2118864 I
VHEMI01492 Torrubiella hemipterigena VHEMI01492 I
TRIATDRAFT_232454 Trichoderma atroviride TRIATDRAFT_232454 I
TRIREDRAFT_112342 Trichoderma reesei TRIREDRAFT_112342 I
TRIVIDRAFT_51124 Trichoderma virens TRIVIDRAFT_51124 I
GSTUM_00001294001 Tuber melanosporum GSTUM_00001294001 I
PV09_05002 Verruconis gallopava PV09_05002 I
Mycgr3G48508 Zymoseptoria tritici Mycgr3G48508 I