POPTR_0002s17310 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0002s17310 T043774_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.914 0.938
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN

NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.890 0.958
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK

MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.890 0.958
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.890 0.938
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN

NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.890 0.938
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.890 0.917
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.882 0.625
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV

BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.879 0.938
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.843 0.500
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV

BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.840 0.625
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s17310.1 bHLH 380 427

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

672 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_01009 Aegilops tauschii F775_01009 N
F775_02805 Aegilops tauschii F775_02805 N
F775_04526 Aegilops tauschii F775_04526 N
Bostr.19427s0042 Boechera stricta Bostr.19427s0042 I
MLOC_56065 Hordeum vulgare MLOC_56065 N
LPERR03G08340 Leersia perrieri LPERR03G08340 N
OBART03G09330 Oryza barthii OBART03G09330 N
OB03G19470 Oryza brachyantha OB03G19470 N
OGLUM03G09410 Oryza glumaepatula OGLUM03G09410 N
BGIOSGA011179 Oryza indica BGIOSGA011179 N
OMERI03G08710 Oryza meridionalis OMERI03G08710 N
ONIVA02G39270 Oryza nivara ONIVA02G39270 N
OPUNC03G08950 Oryza punctata OPUNC03G08950 N
ORUFI03G09460 Oryza rufipogon ORUFI03G09460 N
OS03G0229100 Oryza sativa OS03G0229100 N
Pavir.Ha01098 Panicum virgatum Pavir.Ha01098 N
Pavir.Hb01590 Panicum virgatum Pavir.Hb01590 N
Traes_4BL_2F534B325 Triticum aestivum Traes_4BL_2F534B325 N
Traes_4DL_F822F371E Triticum aestivum Traes_4DL_F822F371E N