CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s17310
(
Populus trichocarpa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
POPTR_0002s17310
T043774_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS01G0235700
M09894_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.914
0.938
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN
NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.890
0.958
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK
MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.890
0.958
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.890
0.938
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.890
0.938
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.890
0.917
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.882
0.625
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV
BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.879
0.938
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.843
0.500
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV
BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.840
0.625
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s17310.1
bHLH
380
427
LNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQ
Links
Other
bHLH
family TFs
Other
Populus trichocarpa
TFs
672 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_01009
Aegilops tauschii
F775_01009
N
F775_02805
Aegilops tauschii
F775_02805
N
F775_04526
Aegilops tauschii
F775_04526
N
Bostr.19427s0042
Boechera stricta
Bostr.19427s0042
I
MLOC_56065
Hordeum vulgare
MLOC_56065
N
LPERR03G08340
Leersia perrieri
LPERR03G08340
N
OBART03G09330
Oryza barthii
OBART03G09330
N
OB03G19470
Oryza brachyantha
OB03G19470
N
OGLUM03G09410
Oryza glumaepatula
OGLUM03G09410
N
BGIOSGA011179
Oryza indica
BGIOSGA011179
N
OMERI03G08710
Oryza meridionalis
OMERI03G08710
N
ONIVA02G39270
Oryza nivara
ONIVA02G39270
N
OPUNC03G08950
Oryza punctata
OPUNC03G08950
N
ORUFI03G09460
Oryza rufipogon
ORUFI03G09460
N
OS03G0229100
Oryza sativa
OS03G0229100
N
Pavir.Ha01098
Panicum virgatum
Pavir.Ha01098
N
Pavir.Hb01590
Panicum virgatum
Pavir.Hb01590
N
Traes_4BL_2F534B325
Triticum aestivum
Traes_4BL_2F534B325
N
Traes_4DL_F822F371E
Triticum aestivum
Traes_4DL_F822F371E
N