Cmyd_10020160 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10020160 T047120_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10020160 bHLH 386 439

Links

Other bHLH family TFs
Other Chelonia mydas TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI003006 Acyrthosiphon pisum ACYPI003006 I 0.000
ENSAMEG00000002016 Ailuropoda melanoleuca ENSAMEG00000002016 I 0.000
Alligator_sinensis_CCG004455.1 Alligator sinensis Alligator_sinensis_CCG004455.1 I 0.000
ENSAPLG00000013446 Anas platyrhynchos ENSAPLG00000013446 I 0.000
TFAP4 Anolis carolinensis ENSACAG00000016352 I 0.000
AGAP010201 Anopheles gambiae AGAP010201 I 0.000
GB48999 Apis mellifera GB48999 I 0.000
BGIBMGA010353 Bombyx mori BGIBMGA010353 I 0.000
ENSP00000204517-D1 Bos grunniens ENSP00000204517-D1 I 0.000
TFAP4 Bos taurus ENSBTAG00000033174 I 0.000
estExt_fgenesh2_pg.C_3260041 Branchiostoma floridae estExt_fgenesh2_pg.C_3260041 I 0.000
fgenesh2_pg.scaffold_326000054 Branchiostoma floridae fgenesh2_pg.scaffold_326000054 I 0.000
TFAP4 Callithrix jacchus ENSCJAG00000019756 I 0.000
TFAP4 Canis familiaris ENSCAFG00000019231 I 0.000
CapteG45346 Capitella teleta CapteG45346 I 0.000
TFAP4 Cavia porcellus ENSCPOG00000004174 I 0.000
Cmyd_10017689 Chelonia mydas Cmyd_10017689 I 0.000
ENSCSAG00000009620 Chlorocebus sabaeus ENSCSAG00000009620 I 0.000
ENSCING00000014406 Ciona intestinalis ENSCING00000014406 I 0.000
ENSCSAVG00000000333 Ciona savignyi ENSCSAVG00000000333 I 0.000
CGI_10026909 Crassostrea gigas CGI_10026909 I 0.000
KGM_15765 Danaus plexippus KGM_15765 I 0.000
tfap4 Danio rerio ENSDARG00000103923 I 0.000
TFAP4 Dasypus novemcinctus ENSDNOG00000039193 I 0.000
Tfap4 Dipodomys ordii ENSDORG00000004656 I 0.000
GF21721 Drosophila ananassae FBgn0098721 I 0.000
GG24179 Drosophila erecta FBgn0116312 I 0.000
GH10096 Drosophila grimshawi FBgn0117577 I 0.000
crp Drosophila melanogaster FBgn0001994 D 0.000
GI14377 Drosophila mojavensis FBgn0137129 I 0.000
GL14101 Drosophila persimilis FBgn0151706 I 0.000
GA20511 Drosophila pseudoobscura FBgn0080505 I 0.000
GM17917 Drosophila sechellia FBgn0172824 I 0.000
GD21926 Drosophila simulans FBgn0193342 I 0.000
GJ16254 Drosophila virilis FBgn0203439 I 0.000
GK24289 Drosophila willistoni FBgn0226250 I 0.000
GE19372 Drosophila yakuba FBgn0236717 I 0.000
TFAP4 Echinops telfairi ENSETEG00000008634 I 0.000
TFAP4 Equus caballus ENSECAG00000022311 I 0.000
TFAP4 Erinaceus europaeus ENSEEUG00000006004 I 0.000
TFAP4 Felis catus ENSFCAG00000011227 I 0.000
ENSFALG00000004331 Ficedula albicollis ENSFALG00000004331 I 0.000
ENSGMOG00000014930 Gadus morhua ENSGMOG00000014930 I 0.000
ENSGMOG00000015232 Gadus morhua ENSGMOG00000015232 I 0.000
tfap4 Gasterosteus aculeatus ENSGACG00000018768 I 0.000
tfap4 Gasterosteus aculeatus ENSGACG00000011329 I 0.000
TFAP4 Gorilla gorilla ENSGGOG00000000451 I 0.000
HMEL008759 Heliconius melpomene HMEL008759 I 0.000
TFAP4 Homo sapiens ENSG00000090447 D 0.000
ENSSTOG00000028040 Ictidomys tridecemlineatus ENSSTOG00000028040 I 0.000
ENSLACG00000000328 Latimeria chalumnae ENSLACG00000000328 I 0.000
ENSLOCG00000002626 Lepisosteus oculatus ENSLOCG00000002626 I 0.000
TFAP4 Loxodonta africana ENSLAFG00000022341 I 0.000
LLOJ009485 Lutzomyia longipalpis LLOJ009485 I 0.000
ENSP00000204517 Macaca fascicularis ENSP00000204517 I 0.000
ENSMEUG00000000888 Macropus eugenii ENSMEUG00000000888 I 0.000
TFAP4 Meleagris gallopavo ENSMGAG00000009411 I 0.000
TFAP4 Monodelphis domestica ENSMODG00000016377 I 0.000
MDOA012071 Musca domestica MDOA012071 I 0.000
ENSMPUG00000015023 Mustela putorius furo ENSMPUG00000015023 I 0.000
Tfap4 Mus musculus ENSMUSG00000005718 D 0.000
Myotis_brandtii_TFAP4_10028039 Myotis brandtii Myotis_brandtii_TFAP4_10028039 I 0.000
TFAP4 Myotis lucifugus ENSMLUG00000005725 I 0.000
ENSNLEG00000009797 Nomascus leucogenys ENSNLEG00000009797 I 0.000
ENSOPRG00000001061 Ochotona princeps ENSOPRG00000001061 I 0.000
Ogr05167 Ophisaurus gracilis Ogr05167 I 0.000
ENSONIG00000016338 Oreochromis niloticus ENSONIG00000016338 I 0.000
ENSONIG00000005196 Oreochromis niloticus ENSONIG00000005196 I 0.000
TFAP4 Ornithorhynchus anatinus ENSOANG00000019858 I 0.000
TFAP4 Oryctolagus cuniculus ENSOCUG00000024550 I 0.000
tfap4 Oryzias latipes ENSORLG00000015050 I 0.000
tfap4 Oryzias latipes ENSORLG00000008286 I 0.000
TFAP4 Otolemur garnettii ENSOGAG00000008955 I 0.000
ENSOARG00000003120 Ovis aries ENSOARG00000003120 I 0.000
TFAP4 Pan troglodytes ENSPTRG00000007713 I 0.000
ENSPANG00000010499 Papio anubis ENSPANG00000010499 I 0.000
ENSPSIG00000009002 Pelodiscus sinensis ENSPSIG00000009002 I 0.000
ENSPFOG00000000836 Poecilia formosa ENSPFOG00000000836 I 0.000
ENSPFOG00000011355 Poecilia formosa ENSPFOG00000011355 I 0.000
Pvit_18996 Pogona vitticeps Pvit_18996 I 0.000
ENSPPYG00000007054 Pongo abelii ENSPPYG00000007054 I 0.000
TFAP4 Procavia capensis ENSPCAG00000011134 I 0.000
ENSPVAG00000005418 Pteropus vampyrus ENSPVAG00000005418 I 0.000
Tfap4 Rattus norvegicus ENSRNOG00000005227 I 0.000
Sakowv30040946m.g Saccoglossus kowalevskii Sakowv30040946m.g I 0.000
ENSSHAG00000011487 Sarcophilus harrisii ENSSHAG00000011487 I 0.000
SPU_003179 Strongylocentrotus purpuratus SPU_003179 I 0.000
tfap4 Takifugu rubripes ENSTRUG00000013344 I 0.000
tfap4 Takifugu rubripes ENSTRUG00000006111 I 0.000
tetur30g00270 Tetranychus urticae tetur30g00270 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000014095 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000002015 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000009740 I 0.000
TCLT_0000678201 Thelazia callipaeda TCLT_0000678201 I 0.000
TFAP4 Tupaia belangeri ENSTBEG00000014089 I 0.000
TFAP4 Tursiops truncatus ENSTTRG00000002710 I 0.000
TFAP4 Vicugna pacos ENSVPAG00000008001 I 0.000
tfap4 Xenopus tropicalis XB-GENE-999265 I 0.000
ENSXMAG00000004632 Xiphophorus maculatus ENSXMAG00000004632 I 0.000
L798_07621 Zootermopsis nevadensis L798_07621 I 0.000