Gfo_R006283 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R006283 T047327_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srebf1
M00754_2.00 		Mus musculus
VWCAYVYSAB
VTSRBRTGWB		 PBM
Weirauch et al.(2013)
pTH0914 		0.914 0.961
Srebf1
M01724_2.00 		Mus musculus
RWCAYVYBD
HVRBRTGWY		 PBM
Weirauch et al.(2014)
pTH5161 		0.914 0.961
Srebf1
M02816_2.00 		Mus musculus
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2013)
Srebf1_1 		0.914 0.961
Srebf1
M08749_2.00 		Mus musculus
VTCASSYSABN
NVTSRSSTGAB		 Misc
Kulakovskiy et al.(2013)
SRBP1_MOUSE.H11MO.0.B 		0.914 0.961
SREBF1
M04062_2.00 		Homo sapiens
VHCACVCSAY
RTSGBGTGDB		 SELEX
Yin et al.(2017)
SREBF1_eDBD_HT-SELEX_1 		0.914 0.941
SREBF1
M04063_2.00 		Homo sapiens
VHCRCGYGDB
VHCRCGYGDB		 SELEX
Yin et al.(2017)
SREBF1_eDBD_HT-SELEX_2 		0.914 0.941
SREBF1
M08048_2.00 		Homo sapiens
VTCACSCCAY
RTGGSGTGAB		 ChIP-seq
Mathelier et al.(2014)
MA0595.1 		0.914 0.941
SREBF1
M08711_2.00 		Homo sapiens
VTCACVYSAYH
DRTSRBGTGAB		 Misc
Kulakovskiy et al.(2013)
SRBP1_HUMAN.H11MO.0.A 		0.914 0.941
SREBF1
M09796_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBF1_02 		0.914 0.941
SREBF1
M09797_2.00 		Homo sapiens
NATCACGTGAB
VTCACGTGATN		 Transfac
Matys et al.(2006)
V$SREBP1_01 		0.914 0.941
SREBF1
M09798_2.00 		Homo sapiens
KRTCACCCCAC
GTGGGGTGAYM		 Transfac
Matys et al.(2006)
V$SREBP1_02 		0.914 0.941
SREBF1
M09799_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBP1_Q5 		0.914 0.941
SREBF1
M09800_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBP1_Q6_01 		0.914 0.941
SREBF1
M09801_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBP1_Q6 		0.914 0.941
SREBF1
M04064_2.00 		Homo sapiens
MTCACVCCAY
RTGGBGTGAK		 SELEX
Yin et al.(2017)
SREBF1_eDBD_Methyl-HT-SELEX_1 		0.914 0.941
SREBF1
M04065_2.00 		Homo sapiens
RTCACCTGAY
RTCAGGTGAY		 SELEX
Yin et al.(2017)
SREBF1_eDBD_Methyl-HT-SELEX_2 		0.914 0.941
HLH106
M03626_2.00 		Drosophila melanogaster
RTCACGTGAY
RTCACGTGAY		 SELEX
Nitta et al.(2015)
HLH106_1 		0.890 0.765
HLH106
M03627_2.00 		Drosophila melanogaster
NRTCACGCCAYH
DRTGGCGTGAYN		 SELEX
Nitta et al.(2015)
HLH106_2 		0.890 0.765
Srebf2
M01725_2.00 		Mus musculus
TSRCGTGA
TCACGYSA		 PBM
Weirauch et al.(2014)
pTH4327 		0.862 0.745
SREBF2
M02811_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2013)
SREBF2_1 		0.862 0.745
SREBF2
M03591_2.00 		Homo sapiens
NRTCACVCCAYH
DRTGGBGTGAYN		 SELEX
Nitta et al.(2015)
SREBF2_1 		0.862 0.745
SREBF2
M04219_2.00 		Homo sapiens
RTCACGCCAY
RTGGCGTGAY		 SELEX
Yin et al.(2017)
SREBF2_eDBD_HT-SELEX_1 		0.862 0.745
SREBF2
M04220_2.00 		Homo sapiens
ATCACGTGAY
RTCACGTGAT		 SELEX
Yin et al.(2017)
SREBF2_eDBD_HT-SELEX_2 		0.862 0.745
SREBF2
M08059_2.00 		Homo sapiens
RTCACVCCAB
VTGGBGTGAY		 ChIP-seq
Mathelier et al.(2014)
MA0596.1 		0.862 0.745
SREBF2
M08741_2.00 		Homo sapiens
NNYCWSBCCABBB
VVVTGGVSWGRNN		 Misc
Kulakovskiy et al.(2013)
SRBP2_HUMAN.H11MO.0.B 		0.862 0.745
Srebf2
M08752_2.00 		Mus musculus
NNYCWSBCCABBB
VVVTGGVSWGRNN		 Misc
Kulakovskiy et al.(2013)
SRBP2_MOUSE.H11MO.0.B 		0.862 0.745
SREBF2
M09462_2.00 		Homo sapiens
MNRTCACVCCAC
GTGGBGTGAYNK		 Misc
Heinz et al.(2010)
HepG2-Srebp2_GSE31477 		0.862 0.745
SREBF2
M09882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBP2_Q6_01 		0.862 0.745
SREBF2
M09883_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SREBP2_Q6 		0.862 0.745
SREBF2
M04221_2.00 		Homo sapiens
RTCACVCCAY
RTGGBGTGAY		 SELEX
Yin et al.(2017)
SREBF2_eDBD_Methyl-HT-SELEX_1 		0.862 0.745
SREBF2
M04222_2.00 		Homo sapiens
RTCACSTGAY
RTCASGTGAY		 SELEX
Yin et al.(2017)
SREBF2_eDBD_Methyl-HT-SELEX_2 		0.862 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006283 bHLH 95 145

Links

Other bHLH family TFs
Other Geospiza fortis TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI005432 Acyrthosiphon pisum ACYPI005432 I 0.864
AAEL010555 Aedes aegypti AAEL010555 I 0.867
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I 0.914
ENSAMEG00000015506 Ailuropoda melanoleuca ENSAMEG00000015506 I 0.862
Alligator_sinensis_CCG007971.1 Alligator sinensis Alligator_sinensis_CCG007971.1 I 0.862
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I 0.890
ENSAPLG00000003145 Anas platyrhynchos ENSAPLG00000003145 I 0.860
ANCCAN_02634 Ancylostoma caninum ANCCAN_02634 I 0.848
ANCCEY_06558 Ancylostoma ceylanicum ANCCEY_06558 I 0.848
SREBF1 Anolis carolinensis ENSACAG00000001181 I 0.866
SREBF2 Anolis carolinensis ENSACAG00000004146 I 0.862
AALB006631 Anopheles albimanus AALB006631 I 0.867
AARA001097 Anopheles arabiensis AARA001097 I 0.867
AATE001073 Anopheles atroparvus AATE001073 I 0.867
ACHR009884 Anopheles christyi ACHR009884 I 0.867
ACOM033566 Anopheles coluzzii ACOM033566 I 0.867
ACUA020889 Anopheles culicifacies ACUA020889 I 0.867
ADAC008255 Anopheles darlingi ADAC008255 I 0.867
ADIR000987 Anopheles dirus ADIR000987 I 0.867
AEPI007594 Anopheles epiroticus AEPI007594 I 0.867
AFAF018960 Anopheles farauti AFAF018960 I 0.867
AFUN011560 Anopheles funestus AFUN011560 I 0.867
AGAP000076 Anopheles gambiae AGAP000076 I 0.867
AMAM021165 Anopheles maculatus AMAM021165 I 0.867
AMEC015010 Anopheles melas AMEC015010 I 0.867
AMEM008702 Anopheles merus AMEM008702 I 0.867
AMIN002144 Anopheles minimus AMIN002144 I 0.867
AQUA008327 Anopheles quadriannulatus AQUA008327 I 0.867
ASIS002143 Anopheles sinensis ASIS002143 I 0.867
ASTEI06218 Anopheles stephensi ASTEI06218 I 0.867
GB54953 Apis mellifera GB54953 I 0.888
Afo_R007963 Aptenodytes forsteri Afo_R007963 I 0.862
ENSAMXG00000008028 Astyanax mexicanus ENSAMXG00000008028 I 0.862
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I 0.914
BGIBMGA001211 Bombyx mori BGIBMGA001211 I 0.861
ENSBTAP00000018956-D1 Bos grunniens ENSBTAP00000018956-D1 I 0.862
ENSP00000348069-D1 Bos grunniens ENSP00000348069-D1 I 0.855
SREBF1 Bos taurus ENSBTAG00000007884 I 0.914
SREBF2 Bos taurus ENSBTAG00000014265 I 0.862
ENSCJAG00000002378 Callithrix jacchus ENSCJAG00000002378 I 0.862
SREBF1 Callithrix jacchus ENSCJAG00000008953 I 0.914
Aan_R009070 Calypte anna Aan_R009070 I 0.914
Aan_R013218 Calypte anna Aan_R013218 I 0.862
SREBF2 Canis familiaris ENSCAFG00000001013 I 0.862
SREBF1 Canis familiaris ENSCAFG00000018436 I 0.914
CapteG165299 Capitella teleta CapteG165299 I 0.855
SREBF1 Cavia porcellus ENSCPOG00000002439 I 0.914
SREBF2 Cavia porcellus ENSCPOG00000013199 I 0.862
Cmyd_10007930 Chelonia mydas Cmyd_10007930 I 0.862
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I 0.874
ENSCSAG00000005734 Chlorocebus sabaeus ENSCSAG00000005734 I 0.862
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I 0.914
CGI_10004108 Crassostrea gigas CGI_10004108 I 0.866
CpipJ_CPIJ008607 Culex pipiens CpipJ_CPIJ008607 I 0.853
CpipJ_CPIJ018167 Culex pipiens CpipJ_CPIJ018167 I 0.867
CPIJ008607 Culex quinquefasciatus CPIJ008607 I 0.853
CPIJ018167 Culex quinquefasciatus CPIJ018167 I 0.867
KGM_21476 Danaus plexippus KGM_21476 I 0.885
srebf2 Danio rerio ENSDARG00000063438 I 0.862
srebf1 Danio rerio ENSDARG00000067607 I 0.914
DAPPUDRAFT_201893 Daphnia pulex DAPPUDRAFT_201893 I 0.851
SREBF2 Dasypus novemcinctus ENSDNOG00000048031 I 0.862
YQE_07365 Dendroctonus ponderosae YQE_07365 I 0.890
DICVIV_05621 Dictyocaulus viviparus DICVIV_05621 I 0.848
Srebf2 Dipodomys ordii ENSDORG00000000691 I 0.862
Srebf1 Dipodomys ordii ENSDORG00000012333 I 0.914
SREBP Drosophila ananassae FBgn0100584 I 0.890
SREBP Drosophila erecta FBgn0108291 I 0.890
SREBP Drosophila grimshawi FBgn0122129 I 0.890
HLH106 Drosophila melanogaster FBgn0261283 D 0.890
SREBP Drosophila mojavensis FBgn0134398 I 0.869
SREBP Drosophila persimilis FBgn0153336 I 0.890
SREBP Drosophila pseudoobscura FBgn0081122 I 0.890
SREBP Drosophila sechellia FBgn0174544 I 0.890
SREBP Drosophila simulans FBgn0186498 I 0.890
SREBP Drosophila virilis FBgn0198580 I 0.890
SREBP Drosophila willistoni FBgn0219495 I 0.890
SREBP Drosophila yakuba FBgn0236960 I 0.890
SREBF2 Echinops telfairi ENSETEG00000000459 I 0.862
SREBF1 Echinops telfairi ENSETEG00000004179 I 0.914
SREBF1 Equus caballus ENSECAG00000019802 I 0.914
SREBF2 Equus caballus ENSECAG00000024608 I 0.862
SREBF2 Erinaceus europaeus ENSEEUG00000003437 I 0.862
SREBF1 Felis catus ENSFCAG00000001983 I 0.914
SREBF2 Felis catus ENSFCAG00000014289 I 0.862
ENSFALG00000011811 Ficedula albicollis ENSFALG00000011811 I 0.862
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I 0.914
ENSGMOG00000006325 Gadus morhua ENSGMOG00000006325 I 0.862
ENSGMOG00000011626 Gadus morhua ENSGMOG00000011626 I 0.882
ENSGALG00000011916 Gallus gallus ENSGALG00000011916 I 0.860
SREBF1 Gallus gallus ENSGALG00000027188 I 0.914
srebf2 Gasterosteus aculeatus ENSGACG00000007259 I 0.862
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I 0.914
Gfo_R004756 Geospiza fortis Gfo_R004756 I 0.862
SREBF1 Gorilla gorilla ENSGGOG00000002713 I 0.914
SREBF2 Gorilla gorilla ENSGGOG00000012065 I 0.862
HCOI01299300 Haemonchus contortus HCOI01299300 I 0.848
HCOI02041100 Haemonchus contortus HCOI02041100 I 0.848
HHAL003331-PA Halyomorpha halys HHAL003331-PA I 0.845
Hsal_02671--XP_396866.3_APIME Harpegnathos saltator Hsal_02671--XP_396866.3_APIME I 0.888
HMEL008680 Heliconius melpomene HMEL008680 I 0.885
HelroG138368 Helobdella robusta HelroG138368 I 0.846
HelroG66987 Helobdella robusta HelroG66987 I 0.848
SREBF1 Homo sapiens ENSG00000072310 D 0.914
SREBF2 Homo sapiens ENSG00000198911 D 0.862
ENSSTOG00000012916 Ictidomys tridecemlineatus ENSSTOG00000012916 I 0.862
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I 0.914
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I 0.914
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I 0.914
ENSLOCG00000011887 Lepisosteus oculatus ENSLOCG00000011887 I 0.862
LotgiG224211 Lottia gigantea LotgiG224211 I 0.890
SREBF2 Loxodonta africana ENSLAFG00000005791 I 0.862
SREBF1 Loxodonta africana ENSLAFG00000021644 I 0.914
LCUP004742 Lucilia cuprina LCUP004742 I 0.879
ENSP00000348069 Macaca fascicularis ENSP00000348069 I 0.914
ENSP00000354476 Macaca fascicularis ENSP00000354476 I 0.862
SREBF2 Macaca mulatta ENSMMUG00000003357 I 0.862
SREBF1 Macaca mulatta ENSMMUG00000023375 I 0.914
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I 0.914
ENSMEUG00000011986 Macropus eugenii ENSMEUG00000011986 I 0.862
MESCA001239 Megaselia scalaris MESCA001239 I 0.866
SREBF2 Meleagris gallopavo ENSMGAG00000012074 I 0.860
SREBF2 Microcebus murinus ENSMICG00000000913 I 0.862
SREBF1 Microcebus murinus ENSMICG00000012535 I 0.914
SREBF1 Monodelphis domestica ENSMODG00000014074 I 0.914
SREBF2 Monodelphis domestica ENSMODG00000016612 I 0.862
MDOA000648 Musca domestica MDOA000648 I 0.879
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I 0.914
ENSMPUG00000016372 Mustela putorius furo ENSMPUG00000016372 I 0.862
Srebf1 Mus musculus ENSMUSG00000020538 D 0.914
Srebf2 Mus musculus ENSMUSG00000022463 D 0.862
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I 0.914
Myotis_brandtii_SREBF2_10014539 Myotis brandtii Myotis_brandtii_SREBF2_10014539 I 0.862
SREBF2 Myotis lucifugus ENSMLUG00000002549 I 0.862
NV10553 Nasonia vitripennis NV10553 I 0.890
NECAME_14255 Necator americanus NECAME_14255 I 0.848
NBR_0002173001 Nippostrongylus brasiliensis NBR_0002173001 I 0.848
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I 0.914
SREBF1 Ochotona princeps ENSOPRG00000015069 I 0.914
Ocbimv22024635m.g Octopus bimaculoides Ocbimv22024635m.g I 0.858
Ogr11708 Ophisaurus gracilis Ogr11708 I 0.890
Ogr14454 Ophisaurus gracilis Ogr14454 I 0.862
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I 0.914
ENSONIG00000008375 Oreochromis niloticus ENSONIG00000008375 I 0.862
SREBF2 Ornithorhynchus anatinus ENSOANG00000002461 I 0.862
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I 0.914
SREBF2 Oryctolagus cuniculus ENSOCUG00000003178 I 0.862
srebf1 Oryzias latipes ENSORLG00000009437 I 0.914
srebf2 Oryzias latipes ENSORLG00000014672 I 0.862
SREBF1 Otolemur garnettii ENSOGAG00000002910 I 0.914
SREBF2 Otolemur garnettii ENSOGAG00000014736 I 0.862
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I 0.914
ENSOARG00000018717 Ovis aries ENSOARG00000018717 I 0.862
SREBF2 Pan troglodytes ENSPTRG00000014439 I 0.862
ENSPANG00000008691 Papio anubis ENSPANG00000008691 I 0.862
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I 0.914
ENSPSIG00000005996 Pelodiscus sinensis ENSPSIG00000005996 I 0.887
ENSPSIG00000014746 Pelodiscus sinensis ENSPSIG00000014746 I 0.862
ENSPMAG00000001400 Petromyzon marinus ENSPMAG00000001400 I 0.885
ENSPMAG00000009384 Petromyzon marinus ENSPMAG00000009384 I 0.847
PPAI004928 Phlebotomus papatasi PPAI004928 I 0.849
ENSPFOG00000000475 Poecilia formosa ENSPFOG00000000475 I 0.862
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I 0.914
Pvit_05020 Pogona vitticeps Pvit_05020 I 0.890
Pvit_18605 Pogona vitticeps Pvit_18605 I 0.862
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I 0.914
ENSPPYG00000011880 Pongo abelii ENSPPYG00000011880 I 0.862
SREBF2 Procavia capensis ENSPCAG00000006497 I 0.862
SREBF1 Procavia capensis ENSPCAG00000014903 I 0.914
SREBF2 Pteropus vampyrus ENSPVAG00000001177 I 0.862
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I 0.914
Srebf1 Rattus norvegicus ENSRNOG00000003463 I 0.914
Srebf2 Rattus norvegicus ENSRNOG00000007400 I 0.862
RPRC014734 Rhodnius prolixus RPRC014734 I 0.845
Sakowv30028178m.g Saccoglossus kowalevskii Sakowv30028178m.g I 0.875
ENSSHAG00000011682 Sarcophilus harrisii ENSSHAG00000011682 I 0.862
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I 0.914
SINV16629 Solenopsis invicta SINV16629 I 0.888
ENSSARG00000006597 Sorex araneus ENSSARG00000006597 I 0.862
L596_g18997 Steinernema carpocapsae L596_g18997 I 0.846
L889_g16826 Steinernema feltiae L889_g16826 I 0.846
L893_g8503 Steinernema glaseri L893_g8503 I 0.846
L898_g465 Steinernema monticolum L898_g465 I 0.846
L892_g28061 Steinernema scapterisci L892_g28061 I 0.846
SMAR011485 Strigamia maritima SMAR011485 I 0.888
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I 0.914
SREBF2 Sus scrofa ENSSSCG00000026092 I 0.862
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I 0.914
ENSTGUG00000009772 Taeniopygia guttata ENSTGUG00000009772 I 0.862
srebf2 Takifugu rubripes ENSTRUG00000007413 I 0.862
srebf1 Takifugu rubripes ENSTRUG00000008197 I 0.882
TELCIR_06021 Teladorsagia circumcincta TELCIR_06021 I 0.848
TELCIR_07862 Teladorsagia circumcincta TELCIR_07862 I 0.848
tetur08g03870 Tetranychus urticae tetur08g03870 I 0.890
srebf2 Tetraodon nigroviridis ENSTNIG00000010835 I 0.862
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I 0.914
TC007163 Tribolium castaneum TC007163 I 0.864
SREBF2 Tupaia belangeri ENSTBEG00000016542 I 0.862
SREBF2 Tursiops truncatus ENSTTRG00000017350 I 0.862
Tal_R010023 Tyto alba Tal_R010023 I 0.862
srebf2.L Xenopus laevis XB-GENE-1011364 I 0.862
srebf2 Xenopus tropicalis XB-GENE-1011360 I 0.862
srebf1 Xenopus tropicalis XB-GENE-987572 I 0.914
XP_002944649 Xenopus tropicalis XP_002944649 I 0.914
ENSXMAG00000003080 Xiphophorus maculatus ENSXMAG00000003080 I 0.862
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I 0.914
L798_14382 Zootermopsis nevadensis L798_14382 I 0.888