Ogr08237 (Ophisaurus gracilis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ogr08237 T047524_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 0.981
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 0.981
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 0.981
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 0.981
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 0.981
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 0.981
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 0.981
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 0.981
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 0.981
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 0.981
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 0.981
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 0.981
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 0.981
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 0.981
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 0.981
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr08237 bHLH 1585 1640

Links

Other bHLH family TFs
Other Ophisaurus gracilis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLIG1 Bos taurus ENSBTAG00000037547 I
OLIG2 Callithrix jacchus ENSCJAG00000009439 I
OLIG1 Canis familiaris ENSCAFG00000031953 I
ENSCPOG00000020839 Cavia porcellus ENSCPOG00000020839 I
ENSCSAG00000018686 Chlorocebus sabaeus ENSCSAG00000018686 I
OLIG1 Dasypus novemcinctus ENSDNOG00000042196 I
ENSETEG00000011024 Echinops telfairi ENSETEG00000011024 I
OLIG1 Homo sapiens ENSG00000184221 D
ENSSTOG00000027713 Ictidomys tridecemlineatus ENSSTOG00000027713 I
ENSLOCG00000017507 Lepisosteus oculatus ENSLOCG00000017507 I
ENSLAFG00000007964 Loxodonta africana ENSLAFG00000007964 I
OLIG1 Macaca mulatta ENSMMUG00000001558 I
OLIG1 Monodelphis domestica ENSMODG00000021070 I
Olig1 Mus musculus ENSMUSG00000046160 I
ENSNLEG00000003823 Nomascus leucogenys ENSNLEG00000003823 I
OLIG1 Ochotona princeps ENSOPRG00000007722 I
Ogr17935 Ophisaurus gracilis Ogr17935 I
ENSOANG00000002423 Ornithorhynchus anatinus ENSOANG00000002423 I
OLIG1 Oryctolagus cuniculus ENSOCUG00000027389 I
OLIG1 Otolemur garnettii ENSOGAG00000033584 I
OLIG1 Pan troglodytes ENSPTRG00000031440 I
Pvit_10684 Pogona vitticeps Pvit_10684 I
OLIG1 Pteropus vampyrus ENSPVAG00000001702 I
Olig1 Rattus norvegicus ENSRNOG00000028648 I
ENSSHAG00000004906 Sarcophilus harrisii ENSSHAG00000004906 I
OLIG1 Sus scrofa ENSSSCG00000012040 I
olig1 Xenopus tropicalis XB-GENE-478472 I