Pm023237 (Prunus mume)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pm023237 T047645_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.914 1.000
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.914 1.000
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.914 0.979
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.914 0.979
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.914 0.958
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.890 0.896
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.879 0.917
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.858 0.604
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.840 0.646
BHLH14
M09785_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G00870_01 		0.840 0.792
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm023237 bHLH 507 554

Links

Other bHLH family TFs
Other Prunus mume TFs

561 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_34.221 Carica papaya evm.TU.supercontig_34.221 N
Ca_10228 Cicer arietinum Ca_10228 N
Cla011265 Citrullus lanatus Cla011265 N
Ciclev10016383m.g Citrus clementina Ciclev10016383m.g N
orange1.1g025739m.g Citrus sinensis orange1.1g025739m.g N
Cucsa.142580 Cucumis sativus Cucsa.142580 N
GLYMA20G10600 Glycine max GLYMA20G10600 N
GLYMA13G03880 Glycine max GLYMA13G03880 N
Gorai.013G266400 Gossypium raimondii Gorai.013G266400 N
MTR_5g088230 Medicago truncatula MTR_5g088230 N
mgf016309m Mimulus guttatus mgf016309m N
POPTR_0001s22790 Populus trichocarpa POPTR_0001s22790 N
Pm001671 Prunus mume Pm001671 N
PRUPE_ppa022266mg Prunus persica PRUPE_ppa022266mg N
SapurV1A.0977s0060 Salix purpurea SapurV1A.0977s0060 N
SapurV1A.1066s0010 Salix purpurea SapurV1A.1066s0010 N
SapurV1A.1951s0040 Salix purpurea SapurV1A.1951s0040 N
SapurV1A.3860s0010 Salix purpurea SapurV1A.3860s0010 N
Solyc01g008980.2 Solanum lycopersicum Solyc01g008980.2 N
PGSC0003DMG400022706 Solanum tuberosum PGSC0003DMG400022706 N
TCM_042034 Theobroma cacao TCM_042034 N
VIT_06s0009g01790 Vitis vinifera VIT_06s0009g01790 N