fgenesh2_pg.scaffold_201000027 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_201000027 T048574_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.871 0.904
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.871 0.904
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.871 0.904
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.871 0.904
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.871 0.904
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.871 0.904
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.871 0.885
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.871 0.885
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.871 0.885
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.871 0.885
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.871 0.885
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.871 0.885
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.871 0.885
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.871 0.885
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.871 0.885
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.871 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_201000027 bHLH 72 124

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_09380 Beauveria bassiana BBA_09380 N 0.000
CPUR_04268 Claviceps purpurea CPUR_04268 N 0.000
CFIO01_02535 Colletotrichum fioriniae CFIO01_02535 N 0.000
CGGC5_7905 Colletotrichum gloeosporioides CGGC5_7905 N 0.000
GLRG_08213 Colletotrichum graminicola GLRG_08213 N 0.000
CH063_12002 Colletotrichum higginsianum CH063_12002 N 0.000
Cob_06895 Colletotrichum orbiculare Cob_06895 N 0.000
CSUB01_08191 Colletotrichum sublineola CSUB01_08191 N 0.000
CCM_08564 Cordyceps militaris CCM_08564 N 0.000
FFUJ_09949 Fusarium fujikuroi FFUJ_09949 N 0.000
FGRRES_04459 Fusarium graminearum FGRRES_04459 N 0.000
FOXG_13751 Fusarium oxysporum FOXG_13751 N 0.000
FPSE_09905 Fusarium pseudograminearum FPSE_09905 N 0.000
NechaG95819 Fusarium solani NechaG95819 N 0.000
GGTG_02165 Gaeumannomyces graminis GGTG_02165 N 0.000
MAM_07880 Metarhizium album MAM_07880 N 0.000
MANI_115749 Metarhizium anisopliae MANI_115749 N 0.000
MBR_01746 Metarhizium brunneum MBR_01746 N 0.000
MGU_02426 Metarhizium guizhouense MGU_02426 N 0.000
MAJ_04177 Metarhizium majus MAJ_04177 N 0.000
X797_002271 Metarhizium robertsii X797_002271 N 0.000
fgenesh1_pm.sca_11_chr8_3_0000161 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000161 N 0.000
OCS_01728 Ophiocordyceps sinensis OCS_01728 N 0.000
S40288_00719 Stachybotrys chartarum S40288_00719 N 0.000
S40285_04994 Stachybotrys chlorohalonata S40285_04994 N 0.000
UV8b_1420 Ustilaginoidea virens UV8b_1420 N 0.000
VDBG_02844 Verticillium albo atrum VDBG_02844 N 0.000
VDBG_02844 Verticillium alfalfae VDBG_02844 N 0.000
VDAG_03761 Verticillium dahliae VDAG_03761 N 0.000