Carubv10006834m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10006834m.g T049353_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.901 0.939
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.873 0.612
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.849 0.592
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.849 0.592
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.849 0.592
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.849 0.592
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.849 0.571
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.849 0.571
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006834m bHLH 153 201

Links

Other bHLH family TFs
Other Capsella rubella TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N
FIT Arabidopsis thaliana AT2G28160 N
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N
Bo3g040310 Brassica oleracea Bo3g040310 N
Bo4g071850 Brassica oleracea Bo4g071850 N
Bra000495 Brassica rapa Bra000495 N
Bra011972 Brassica rapa Bra011972 N
PK26582.1 Cannabis sativa PK26582.1 N
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N
Carubv10023654m.g Capsella rubella Carubv10023654m.g N
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N
Ca_17453 Cicer arietinum Ca_17453 N
Cla008847 Citrullus lanatus Cla008847 N
Cucsa.385700 Cucumis sativus Cucsa.385700 N
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N
GLYMA13G39650 Glycine max GLYMA13G39650 N
GLYMA12G30240 Glycine max GLYMA12G30240 N
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N
cassava28523.m1 Manihot esculenta cassava28523.m1 N
MTR_2g084280 Medicago truncatula MTR_2g084280 N
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N
FIT1 Populus trichocarpa POPTR_0009s01100 N
Pm001154 Prunus mume Pm001154 N
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N
TCM_041590 Theobroma cacao TCM_041590 N