Carubv10007380m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10007380m.g T049357_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DYT1
M02654_2.00 		Arabidopsis thaliana
TCACGTGWYTBRYK
MRYVARWCACGTGA		 SELEX
Mathelier et al.(2014)
MA0580.1 		0.870 0.939
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007380m bHLH 31 79

Links

Other bHLH family TFs
Other Capsella rubella TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g10158 Acanthocheilonema viteae nAv.1.0.1.g10158 I
ACYPI000853 Acyrthosiphon pisum ACYPI000853 I
AAEL000414 Aedes aegypti AAEL000414 I
ENSAMEG00000002957 Ailuropoda melanoleuca ENSAMEG00000002957 I
ENSAMEG00000005973 Ailuropoda melanoleuca ENSAMEG00000005973 I
Alligator_sinensis_CCG003634.1 Alligator sinensis Alligator_sinensis_CCG003634.1 I
Alligator_sinensis_CCG021193.1 Alligator sinensis Alligator_sinensis_CCG021193.1 I
ENSAPLG00000004766 Anas platyrhynchos ENSAPLG00000004766 I
ANCCAN_10844 Ancylostoma caninum ANCCAN_10844 I
ANCDUO_12689 Ancylostoma duodenale ANCDUO_12689 I
ACAC_0000901201 Angiostrongylus cantonensis ACAC_0000901201 I
ASIM_0000465001 Anisakis simplex ASIM_0000465001 I
ASIM_0002125701 Anisakis simplex ASIM_0002125701 I
SIX3 Anolis carolinensis ENSACAG00000003788 I
SIX6 Anolis carolinensis ENSACAG00000016672 I
AALB009639 Anopheles albimanus AALB009639 I
AARA009925 Anopheles arabiensis AARA009925 I
AATE000766 Anopheles atroparvus AATE000766 I
ACHR008572 Anopheles christyi ACHR008572 I
ACOM034752 Anopheles coluzzii ACOM034752 I
ACUA001310 Anopheles culicifacies ACUA001310 I
ACUA002616 Anopheles culicifacies ACUA002616 I
ADIR006579 Anopheles dirus ADIR006579 I
AEPI001190 Anopheles epiroticus AEPI001190 I
AFAF019805 Anopheles farauti AFAF019805 I
AFUN008977 Anopheles funestus AFUN008977 I
AGAP003871 Anopheles gambiae AGAP003871 I
AMAM011893 Anopheles maculatus AMAM011893 I
AMEC005741 Anopheles melas AMEC005741 I
AMEM007922 Anopheles merus AMEM007922 I
AMIN004040 Anopheles minimus AMIN004040 I
AQUA001345 Anopheles quadriannulatus AQUA001345 I
ASIS007680 Anopheles sinensis ASIS007680 I
ASTEI00801 Anopheles stephensi ASTEI00801 I
GB49751 Apis mellifera GB49751 I
ALUE_0001129001 Ascaris lumbricoides ALUE_0001129001 I
ASU_12972 Ascaris suum ASU_12972 I
ENSAMXG00000000070 Astyanax mexicanus ENSAMXG00000000070 I
ENSAMXG00000004283 Astyanax mexicanus ENSAMXG00000004283 I
ENSAMXG00000015883 Astyanax mexicanus ENSAMXG00000015883 I
ENSAMXG00000019356 Astyanax mexicanus ENSAMXG00000019356 I
ENSAMXG00000021319 Astyanax mexicanus ENSAMXG00000021319 I
ACEP19966 Atta cephalotes ACEP19966 I
BGLB009117 Biomphalaria glabrata BGLB009117 I
BGIBMGA011285 Bombyx mori BGIBMGA011285 I
ENSBTAP00000038493-D1 Bos grunniens ENSBTAP00000038493-D1 I
ENSP00000371135-D1 Bos grunniens ENSP00000371135-D1 I
SIX3 Bos taurus ENSBTAG00000027017 I
fgenesh2_pg.scaffold_136000063 Branchiostoma floridae fgenesh2_pg.scaffold_136000063 I
fgenesh2_pg.scaffold_750000002 Branchiostoma floridae fgenesh2_pg.scaffold_750000002 I
Bm6192 Brugia malayi Bm6192 I
BXY_0377100 Bursaphelenchus xylophilus BXY_0377100 I
CBN09994 Caenorhabditis brenneri CBN09994 I
CBN28477 Caenorhabditis brenneri CBN28477 I
CBG23282 Caenorhabditis briggsae CBG23282 I
ceh-32 Caenorhabditis elegans WBGene00000453 I
CJA03203 Caenorhabditis japonica CJA03203 I
CRE27322 Caenorhabditis remanei CRE27322 I
SIX3 Callithrix jacchus ENSCJAG00000000736 I
SIX6 Callithrix jacchus ENSCJAG00000019120 I
Cflo_00678--XP_623764.2_APIME Camponotus floridanus Cflo_00678--XP_623764.2_APIME I
SIX3 Canis familiaris ENSCAFG00000002547 I
SIX6 Canis familiaris ENSCAFG00000015619 I
CapteG180297 Capitella teleta CapteG180297 I
CapteG180301 Capitella teleta CapteG180301 I
CapteG226834 Capitella teleta CapteG226834 I
SIX3 Cavia porcellus ENSCPOG00000022943 I
SIX6 Cavia porcellus ENSCPOG00000023314 I
Cmyd_10004141 Chelonia mydas Cmyd_10004141 I
Cmyd_10008496 Chelonia mydas Cmyd_10008496 I
ENSCSAG00000013334 Chlorocebus sabaeus ENSCSAG00000013334 I
ENSCSAG00000014178 Chlorocebus sabaeus ENSCSAG00000014178 I
SIX6 Choloepus hoffmanni ENSCHOG00000008045 I
CLEC002786 Cimex lectularius CLEC002786 I
ENSCING00000005828 Ciona intestinalis ENSCING00000005828 I
ENSCSAVG00000001309 Ciona savignyi ENSCSAVG00000001309 I
csin101619 Clonorchis sinensis csin101619 I
CGI_10027570 Crassostrea gigas CGI_10027570 I
CpipJ_CPIJ018547 Culex pipiens CpipJ_CPIJ018547 I
CPIJ018547 Culex quinquefasciatus CPIJ018547 I
KGM_08309 Danaus plexippus KGM_08309 I
six6a Danio rerio ENSDARG00000025187 I
six6b Danio rerio ENSDARG00000031316 I
six3b Danio rerio ENSDARG00000054879 I
six3a Danio rerio ENSDARG00000058008 I
six7 Danio rerio ENSDARG00000070107 I
DAPPUDRAFT_107399 Daphnia pulex DAPPUDRAFT_107399 I
SIX6 Dasypus novemcinctus ENSDNOG00000005251 I
YQE_01521 Dendroctonus ponderosae YQE_01521 I
YQE_03131 Dendroctonus ponderosae YQE_03131 I
DICVIV_01579 Dictyocaulus viviparus DICVIV_01579 I
DILT_0000757601 Diphyllobothrium latum DILT_0000757601 I
Six6 Dipodomys ordii ENSDORG00000007182 I
nDi.2.2.2.g11226 Dirofilaria immitis nDi.2.2.2.g11226 I
DME_0000021801 Dracunculus medinensis DME_0000021801 I
GF13656 Drosophila ananassae FBgn0090684 I
GG23326 Drosophila erecta FBgn0115477 I
GH21899 Drosophila grimshawi FBgn0129360 I
Optix Drosophila melanogaster FBgn0025360 D
GI19347 Drosophila mojavensis FBgn0142085 I
GL11483 Drosophila persimilis FBgn0149092 I
GA14941 Drosophila pseudoobscura FBgn0074967 I
GM21001 Drosophila sechellia FBgn0175882 I
GD10533 Drosophila simulans FBgn0182304 I
GJ22125 Drosophila virilis FBgn0209239 I
GK23166 Drosophila willistoni FBgn0225128 I
GE19170 Drosophila yakuba FBgn0236530 I
ECANG7_06860 Echinococcus canadensis ECANG7_06860 I
EmuJ_000106600 Echinococcus multilocularis EmuJ_000106600 I
SIX6 Echinops telfairi ENSETEG00000006958 I
ECPE_0000625401 Echinostoma caproni ECPE_0000625401 I
EEL_0000088401 Elaeophora elaphi EEL_0000088401 I
EVEC_0001102801 Enterobius vermicularis EVEC_0001102801 I
SIX6 Equus caballus ENSECAG00000022806 I
SIX6 Erinaceus europaeus ENSEEUG00000014915 I
D915_03318 Fasciola hepatica D915_03318 I
SIX6 Felis catus ENSFCAG00000015465 I
ENSFALG00000003455 Ficedula albicollis ENSFALG00000003455 I
ENSFALG00000012979 Ficedula albicollis ENSFALG00000012979 I
ENSGMOG00000006624 Gadus morhua ENSGMOG00000006624 I
ENSGMOG00000009723 Gadus morhua ENSGMOG00000009723 I
ENSGMOG00000010821 Gadus morhua ENSGMOG00000010821 I
SIX6 Gallus gallus ENSGALG00000020359 I
ENSGACG00000002799 Gasterosteus aculeatus ENSGACG00000002799 I
six6a Gasterosteus aculeatus ENSGACG00000008430 I
six7 Gasterosteus aculeatus ENSGACG00000019038 I
GPLIN_000987900 Globodera pallida GPLIN_000987900 I
GPLIN_001520000 Globodera pallida GPLIN_001520000 I
GPUH_0000068101 Gongylonema pulchrum GPUH_0000068101 I
SIX6 Gorilla gorilla ENSGGOG00000008594 I
HCOI02102800 Haemonchus contortus HCOI02102800 I
HHAL003615-PA Halyomorpha halys HHAL003615-PA I
Hsal_01755--XP_623764.2_APIME Harpegnathos saltator Hsal_01755--XP_623764.2_APIME I
HMEL001028 Heliconius melpomene HMEL001028 I
HelroG181629 Helobdella robusta HelroG181629 I
SIX3 Homo sapiens ENSG00000138083 D
SIX6 Homo sapiens ENSG00000184302 D
TTAC_0000045201 Hydatigera taeniaeformis TTAC_0000045201 I
XP_002162399.1 Hydra magnipapillata XP_002162399.1 I
HDID_0000074101 Hymenolepis diminuta HDID_0000074101 I
HmN_000022100 Hymenolepis microstoma HmN_000022100 I
HNAJ_0000289701 Hymenolepis nana HNAJ_0000289701 I
ENSSTOG00000014602 Ictidomys tridecemlineatus ENSSTOG00000014602 I
ENSSTOG00000028280 Ictidomys tridecemlineatus ENSSTOG00000028280 I
ISCW007609 Ixodes scapularis ISCW007609 I
ENSLACG00000015041 Latimeria chalumnae ENSLACG00000015041 I
ENSLACG00000018574 Latimeria chalumnae ENSLACG00000018574 I
ENSLOCG00000001646 Lepisosteus oculatus ENSLOCG00000001646 I
ENSLOCG00000010080 Lepisosteus oculatus ENSLOCG00000010080 I
ENSLOCG00000016373 Lepisosteus oculatus ENSLOCG00000016373 I
LDEC007795 Leptinotarsa decemlineata LDEC007795 I
nLs.2.1.2.g08764 Litomosoides sigmodontis nLs.2.1.2.g08764 I
LotgiG179424 Lottia gigantea LotgiG179424 I
SIX6 Loxodonta africana ENSLAFG00000003106 I
LCUP014455 Lucilia cuprina LCUP014455 I
LLOJ003563 Lutzomyia longipalpis LLOJ003563 I
ENSP00000371135 Macaca fascicularis ENSP00000371135 I
ENSMMUG00000002829 Macaca mulatta ENSMMUG00000002829 I
SIX3 Macaca mulatta ENSMMUG00000014824 I
ENSMEUG00000004124 Macropus eugenii ENSMEUG00000004124 I
ENSMEUG00000014494 Macropus eugenii ENSMEUG00000014494 I
ENSMGAG00000013572 Meleagris gallopavo ENSMGAG00000013572 I
Minc12153 Meloidogyne incognita Minc12153 I
MCOS_0000125801 Mesocestoides corti MCOS_0000125801 I
ENSMICG00000016417 Microcebus murinus ENSMICG00000016417 I
ML01466a Mnemiopsis leidyi ML01466a I
ML082610a Mnemiopsis leidyi ML082610a I
SIX3 Monodelphis domestica ENSMODG00000000753 I
SIX6 Monodelphis domestica ENSMODG00000008633 I
MDOA010171 Musca domestica MDOA010171 I
ENSMPUG00000006406 Mustela putorius furo ENSMPUG00000006406 I
ENSMPUG00000011994 Mustela putorius furo ENSMPUG00000011994 I
Six6 Mus musculus ENSMUSG00000021099 D
Six3 Mus musculus ENSMUSG00000038805 D
Myotis_brandtii_SIX3_10033453 Myotis brandtii Myotis_brandtii_SIX3_10033453 I
Myotis_brandtii_SIX6_10027189 Myotis brandtii Myotis_brandtii_SIX6_10027189 I
SIX6 Myotis lucifugus ENSMLUG00000013235 I
NV12377 Nasonia vitripennis NV12377 I
NEMVEDRAFT_v1g130873 Nematostella vectensis NEMVEDRAFT_v1g130873 I
ENSNLEG00000013765 Nomascus leucogenys ENSNLEG00000013765 I
ENSNLEG00000019059 Nomascus leucogenys ENSNLEG00000019059 I
SIX6 Ochotona princeps ENSOPRG00000008603 I
Ocbimv22010133m.g Octopus bimaculoides Ocbimv22010133m.g I
SNAPOd2T00007862001 Oikopleura dioica SNAPOd2T00007862001 I
SNAPOd2T00021861001 Oikopleura dioica SNAPOd2T00021861001 I
OFLC_0000320301 Onchocerca flexuosa OFLC_0000320301 I
nOo.2.0.1.g03048 Onchocerca ochengi nOo.2.0.1.g03048 I
WBGene00248965 Onchocerca volvulus WBGene00248965 I
Ogr08724 Ophisaurus gracilis Ogr08724 I
T265_04507 Opisthorchis viverrini T265_04507 I
ENSONIG00000000939 Oreochromis niloticus ENSONIG00000000939 I
ENSONIG00000013023 Oreochromis niloticus ENSONIG00000013023 I
ENSONIG00000015890 Oreochromis niloticus ENSONIG00000015890 I
ENSONIG00000020119 Oreochromis niloticus ENSONIG00000020119 I
SIX6 Oryctolagus cuniculus ENSOCUG00000004752 I
six3 Oryzias latipes ENSORLG00000004438 I
six7 Oryzias latipes ENSORLG00000007974 I
six3 Oryzias latipes ENSORLG00000010313 D
six6a Oryzias latipes ENSORLG00000015766 I
SIX3 Otolemur garnettii ENSOGAG00000025984 I
SIX6 Otolemur garnettii ENSOGAG00000033548 I
ENSOARG00000006100 Ovis aries ENSOARG00000006100 I
ENSOARG00000021128 Ovis aries ENSOARG00000021128 I
SIX6 Pan troglodytes ENSPTRG00000006409 I
SIX3 Pan troglodytes ENSPTRG00000011887 I
ENSPANG00000006893 Papio anubis ENSPANG00000006893 I
ENSPANG00000020968 Papio anubis ENSPANG00000020968 I
PTRK_0001297400 Parastrongyloides trichosuri PTRK_0001297400 I
PHUM338410 Pediculus humanus PHUM338410 I
ENSPSIG00000008212 Pelodiscus sinensis ENSPSIG00000008212 I
ENSPSIG00000014644 Pelodiscus sinensis ENSPSIG00000014644 I
ENSPMAG00000002608 Petromyzon marinus ENSPMAG00000002608 I
ENSPMAG00000010130 Petromyzon marinus ENSPMAG00000010130 I
ENSPFOG00000001455 Poecilia formosa ENSPFOG00000001455 I
ENSPFOG00000004004 Poecilia formosa ENSPFOG00000004004 I
ENSPFOG00000004034 Poecilia formosa ENSPFOG00000004034 I
ENSPFOG00000010291 Poecilia formosa ENSPFOG00000010291 I
ENSPFOG00000010920 Poecilia formosa ENSPFOG00000010920 I
Pvit_17835 Pogona vitticeps Pvit_17835 I
ENSPPYG00000005873 Pongo abelii ENSPPYG00000005873 I
ENSPPYG00000012447 Pongo abelii ENSPPYG00000012447 I
scaffold325-EXSNAP2012.13 Pristionchus exspectatus scaffold325-EXSNAP2012.13 I
Ppa-ceh-32 Pristionchus pacificus PPA02078 I
SIX6 Procavia capensis ENSPCAG00000001296 I
PXEA_0000365801 Protopolystoma xenopodis PXEA_0000365801 I
PXEA_0002107901 Protopolystoma xenopodis PXEA_0002107901 I
SIX6 Pteropus vampyrus ENSPVAG00000015898 I
Six6 Rattus norvegicus ENSRNOG00000006296 I
Six3 Rattus norvegicus ENSRNOG00000057031 I
RSKR_0000467100 Rhabditophanes kr3021 RSKR_0000467100 I
RPRC000524 Rhodnius prolixus RPRC000524 I
nRc.2.0.1.g04987 Romanomermis culicivorax nRc.2.0.1.g04987 I
Sakowv30026350m.g Saccoglossus kowalevskii Sakowv30026350m.g I
ENSSHAG00000015311 Sarcophilus harrisii ENSSHAG00000015311 I
SSLN_0000985401 Schistocephalus solidus SSLN_0000985401 I
SCUD_0001199101 Schistosoma curassoni SCUD_0001199101 I
A_06158 Schistosoma haematobium A_06158 I
Sjc_0073990 Schistosoma japonicum Sjc_0073990 I
Smp_009630 Schistosoma mansoni Smp_009630 I
SMRZ_0002158801 Schistosoma margrebowiei SMRZ_0002158801 I
SMU15001247 Schmidtea mediterranea SMU15001247 I
SMU15005705 Schmidtea mediterranea SMU15005705 I
SMU15035215 Schmidtea mediterranea SMU15035215 I
SMU15037290 Schmidtea mediterranea SMU15037290 I
SINV23383 Solenopsis invicta SINV23383 I
SIX6 Sorex araneus ENSSARG00000008792 I
L596_g22844 Steinernema carpocapsae L596_g22844 I
L889_g20608 Steinernema feltiae L889_g20608 I
L893_g19860 Steinernema glaseri L893_g19860 I
L898_g14252 Steinernema monticolum L898_g14252 I
L892_g6712 Steinernema scapterisci L892_g6712 I
SMAR003359 Strigamia maritima SMAR003359 I
SPU_018908 Strongylocentrotus purpuratus SPU_018908 I
SPAL_0000317000 Strongyloides papillosus SPAL_0000317000 I
SSTP_0000077100 Strongyloides stercoralis SSTP_0000077100 I
SVE_1583100 Strongyloides venezuelensis SVE_1583100 I
SIX6 Sus scrofa ENSSSCG00000005086 I
SMUV_0001100801 Syphacia muris SMUV_0001100801 I
TASK_0000662201 Taenia asiatica TASK_0000662201 I
TsM_001004000 Taenia solium TsM_001004000 I
SIX3 Taeniopygia guttata ENSTGUG00000003864 I
SIX6 Taeniopygia guttata ENSTGUG00000012995 I
six7 Takifugu rubripes ENSTRUG00000004681 I
six3b Takifugu rubripes ENSTRUG00000007423 I
six6a Takifugu rubripes ENSTRUG00000010571 I
ENSTRUG00000015049 Takifugu rubripes ENSTRUG00000015049 I
tetur10g05220 Tetranychus urticae tetur10g05220 I
ENSTNIG00000002239 Tetraodon nigroviridis ENSTNIG00000002239 I
six7 Tetraodon nigroviridis ENSTNIG00000003656 I
ENSTNIG00000005328 Tetraodon nigroviridis ENSTNIG00000005328 I
six3b Tetraodon nigroviridis ENSTNIG00000007466 I
six6a Tetraodon nigroviridis ENSTNIG00000017347 I
TCLT_0000224101 Thelazia callipaeda TCLT_0000224101 I
TCNE_0000507501 Toxocara canis TCNE_0000507501 N
TC000361 Tribolium castaneum TC000361 I
D917_10040 Trichinella nativa D917_10040 I
TriadG32356 Trichoplax adhaerens TriadG32356 I
TMUE_s0001027500 Trichuris muris TMUE_s0001027500 I
D918_03319 Trichuris suis D918_03319 I
TTRE_0000353301 Trichuris trichiura TTRE_0000353301 I
SIX6 Tupaia belangeri ENSTBEG00000017196 I
SIX6 Tursiops truncatus ENSTTRG00000003743 I
WUBG_00045 Wuchereria bancrofti WUBG_00045 I
AAG42357 Xenopus laevis AAG42357 I
AAG42358 Xenopus laevis AAG42358 I
AAG42359 Xenopus laevis AAG42359 I
six6.S Xenopus laevis XB-GENE-1021810 I
six3.L Xenopus laevis XB-GENE-478765 I
six6.L Xenopus laevis XB-GENE-864947 I
six3 Xenopus tropicalis XB-GENE-478761 I
six6 Xenopus tropicalis XB-GENE-483146 I
XP_002932435 Xenopus tropicalis XP_002932435 I
ENSXMAG00000013923 Xiphophorus maculatus ENSXMAG00000013923 I
ENSXMAG00000015988 Xiphophorus maculatus ENSXMAG00000015988 I
ENSXMAG00000019592 Xiphophorus maculatus ENSXMAG00000019592 I
ENSXMAG00000020326 Xiphophorus maculatus ENSXMAG00000020326 I
L798_08644 Zootermopsis nevadensis L798_08644 I