tcf3 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-478265 T051780_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.808
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.808
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.808
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.808
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.808
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.808
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.808
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.808
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.855 0.827
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.855 0.827
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.855 0.827
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.855 0.769
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.855 0.769
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.855 0.769
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.855 0.769
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.855 0.769
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.855 0.769
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.855 0.769
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.855 0.769
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.855 0.769
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.855 0.769
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.855 0.769
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.855 0.769
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI36071 bHLH 553 606

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_042290 Acremonium chrysogenum ACRE_042290 N 0.000
M437DRAFT_14468 Aureobasidium melanogenum M437DRAFT_14468 I 0.000
M438DRAFT_31288 Aureobasidium pullulans M438DRAFT_31288 I 0.000
BAUCODRAFT_119725 Baudoinia compniacensis BAUCODRAFT_119725 I 0.000
BBA_00362 Beauveria bassiana BBA_00362 N 0.000
COCC4DRAFT_62452 Bipolaris maydis COCC4DRAFT_62452 I 0.000
COCMIDRAFT_23818 Bipolaris oryzae COCMIDRAFT_23818 I 0.000
COCSADRAFT_276273 Bipolaris sorokiniana COCSADRAFT_276273 I 0.000
COCVIDRAFT_38721 Bipolaris victoriae COCVIDRAFT_38721 I 0.000
COCCADRAFT_21472 Bipolaris zeicola COCCADRAFT_21472 I 0.000
BDDG_00695 Blastomyces dermatitidis BDDG_00695 I 0.000
BGHDH14_bgh02178 Blumeria graminis BGHDH14_bgh02178 I 0.000
Bcin01g06300 Botrytis cinerea Bcin01g06300 I 0.000
A1O1_00440 Capronia coronata A1O1_00440 I 0.000
PV04_01647 Capronia semiimmersa PV04_01647 I 0.000
CHGG_05934 Chaetomium globosum CHGG_05934 I 0.000
Z519_03111 Cladophialophora bantiana Z519_03111 I 0.000
G647_00459 Cladophialophora carrionii G647_00459 I 0.000
PV07_10272 Cladophialophora immunda PV07_10272 I 0.000
A1O5_03789 Cladophialophora psammophila A1O5_03789 I 0.000
A1O7_00422 Cladophialophora yegresii A1O7_00422 I 0.000
CPUR_06219 Claviceps purpurea CPUR_06219 N 0.000
CIMG_01041 Coccidioides immitis CIMG_01041 I 0.000
CPC735_053190 Coccidioides posadasii CPC735_053190 I 0.000
estExt_Genewise1Plus.C_100794 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_100794 I 0.000
CFIO01_12884 Colletotrichum fioriniae CFIO01_12884 I 0.000
CGGC5_6423 Colletotrichum gloeosporioides CGGC5_6423 I 0.000
GLRG_04444 Colletotrichum graminicola GLRG_04444 I 0.000
CH063_10875 Colletotrichum higginsianum CH063_10875 I 0.000
Cob_08038 Colletotrichum orbiculare Cob_08038 I 0.000
CSUB01_11791 Colletotrichum sublineola CSUB01_11791 I 0.000
estExt_fgenesh1_pg.C_50728 Cryphonectria parasitica estExt_fgenesh1_pg.C_50728 I 0.000
HMPREF1541_05909 Cyphellophora europaea HMPREF1541_05909 I 0.000
DOTSEDRAFT_74982 Dothistroma septosporum DOTSEDRAFT_74982 I 0.000
UCREL1_7924 Eutypa lata UCREL1_7924 I 0.000
A1O9_01459 Exophiala aquamarina A1O9_01459 I 0.000
HMPREF1120_06024 Exophiala dermatitidis HMPREF1120_06024 I 0.000
PV10_06256 Exophiala mesophila PV10_06256 I 0.000
PV06_03201 Exophiala oligosperma PV06_03201 I 0.000
PV11_07704 Exophiala sideris PV11_07704 I 0.000
PV08_05635 Exophiala spinifera PV08_05635 I 0.000
PV05_11407 Exophiala xenobiotica PV05_11407 I 0.000
Z517_08474 Fonsecaea pedrosoi Z517_08474 I 0.000
FFUJ_01228 Fusarium fujikuroi FFUJ_01228 N 0.000
GGTG_01991 Gaeumannomyces graminis GGTG_01991 I 0.000
HCBG_00900 Histoplasma capsulatum HCBG_00900 D 0.000
LEMA_P095280.1 Leptosphaeria maculans LEMA_P095280.1 I 0.000
MGG_04729 Magnaporthe oryzae MGG_04729 I 0.000
MAPG_06349 Magnaporthe poae MAPG_06349 I 0.000
MBM_02592 Marssonina brunnea MBM_02592 I 0.000
MGU_04950 Metarhizium guizhouense MGU_04950 N 0.000
X797_003701 Metarhizium robertsii X797_003701 N 0.000
MYCTH_77476 Myceliophthora thermophila MYCTH_77476 I 0.000
estExt_Genewise1Plus.C_380118 Mycosphaerella fijiensis estExt_Genewise1Plus.C_380118 I 0.000
e_gw1.11.537.1 Mycosphaerella graminicola e_gw1.11.537.1 I 0.000
OCS_04756 Ophiocordyceps sinensis OCS_04756 N 0.000
F503_02611 Ophiostoma piceae uamh F503_02611 I 0.000
PABG_01647 Paracoccidioides brasiliensis PABG_01647 I 0.000
PAAG_01064 Paracoccidioides sp lutzii PAAG_01064 I 0.000
PFICI_02022 Pestalotiopsis fici PFICI_02022 I 0.000
MYCFIDRAFT_60981 Pseudocercospora fijiensis MYCFIDRAFT_60981 I 0.000
GMDG_04728 Pseudogymnoascus destructans GMDG_04728 I 0.000
V499_08165 Pseudogymnoascus pannorum V499_08165 I 0.000
PTT_18239 Pyrenophora teres PTT_18239 I 0.000
Z518_03932 Rhinocladiella mackenziei Z518_03932 I 0.000
SAPIO_CDS3166 Scedosporium apiospermum SAPIO_CDS3166 I 0.000
SBOR_1325 Sclerotinia borealis SBOR_1325 I 0.000
SETTUDRAFT_103803 Setosphaeria turcica SETTUDRAFT_103803 I 0.000
SEPMUDRAFT_52418 Sphaerulina musiva SEPMUDRAFT_52418 I 0.000
THITE_2112431 Thielavia terrestris THITE_2112431 I 0.000
UCRPA7_6713 Togninia minima UCRPA7_6713 I 0.000
VHEMI04007 Torrubiella hemipterigena VHEMI04007 N 0.000
TRIATDRAFT_297376 Trichoderma atroviride TRIATDRAFT_297376 N 0.000
TRIREDRAFT_56863 Trichoderma reesei TRIREDRAFT_56863 N 0.000
TRIVIDRAFT_173229 Trichoderma virens TRIVIDRAFT_173229 N 0.000
Mycgr3G49965 Zymoseptoria tritici Mycgr3G49965 I 0.000