clock.L (Xenopus laevis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-6254406 T051860_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.881 0.882
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.881 0.882
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.881 0.882
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.881 0.882
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.881 0.882
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.881 0.882
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.881 0.882
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.881 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAF12827 bHLH 26 76
AAF34772 bHLH 26 76

Links

Other bHLH family TFs
Other Xenopus laevis TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_086950 Acremonium chrysogenum ACRE_086950 I
MCYG_07723 Arthroderma otae MCYG_07723 I
e_gw1.00168.127.1 Aspergillus carbonarius e_gw1.00168.127.1 I
ACLA_058410 Aspergillus clavatus CADACLAG00005638 I
AFUA_8G05010 Aspergillus fumigatus CADAFUAG00002982 I
CADANGAG00013243 Aspergillus niger CADANGAG00013243 I
ATEG_00121 Aspergillus terreus CADATEAG00010137 I
BBA_07230 Beauveria bassiana BBA_07230 I
Bcin10g00520 Botrytis cinerea Bcin10g00520 I
PVAR5_2782 Byssochlamys spectabilis PVAR5_2782 I
A1O1_05301 Capronia coronata A1O1_05301 I
A1O3_09463 Capronia epimyces A1O3_09463 I
PV04_07860 Capronia semiimmersa PV04_07860 I
CTHT_0067990 Chaetomium thermophilum CTHT_0067990 I
G647_02686 Cladophialophora carrionii G647_02686 I
CPUR_07913 Claviceps purpurea CPUR_07913 I
CIMG_02171 Coccidioides immitis CIMG_02171 I
CPC735_038450 Coccidioides posadasii CPC735_038450 I
CFIO01_09458 Colletotrichum fioriniae CFIO01_09458 I
CGGC5_941 Colletotrichum gloeosporioides CGGC5_941 I
GLRG_01267 Colletotrichum graminicola GLRG_01267 I
CH063_02646 Colletotrichum higginsianum CH063_02646 I
Cob_10292 Colletotrichum orbiculare Cob_10292 I
CSUB01_03484 Colletotrichum sublineola CSUB01_03484 I
CCM_03986 Cordyceps militaris CCM_03986 I
e_gw1.13.52.1 Cryphonectria parasitica e_gw1.13.52.1 I
EPUS_00874 Endocarpon pusillum EPUS_00874 I
UCREL1_5559 Eutypa lata UCREL1_5559 I
A1O9_04358 Exophiala aquamarina A1O9_04358 I
Z517_02728 Fonsecaea pedrosoi Z517_02728 I
FGRRES_01877 Fusarium graminearum FGRRES_01877 D
FOXG_04255 Fusarium oxysporum FOXG_04255 I
FPSE_05401 Fusarium pseudograminearum FPSE_05401 I
NechaG96840 Fusarium solani NechaG96840 I
FVEG_07376 Fusarium verticillioides FVEG_07376 I
GGTG_10509 Gaeumannomyces graminis GGTG_10509 I
M7I_6075 Glarea lozoyensis M7I_6075 I
MGG_09200 Magnaporthe oryzae MGG_09200 I
MAPG_09942 Magnaporthe poae MAPG_09942 I
MBM_09935 Marssonina brunnea MBM_09935 I
MAC_08573 Metarhizium acridum MAC_08573 I
MAM_01703 Metarhizium album MAM_01703 I
MANI_018170 Metarhizium anisopliae MANI_018170 I
MBR_07462 Metarhizium brunneum MBR_07462 I
MGU_03754 Metarhizium guizhouense MGU_03754 I
MAJ_03692 Metarhizium majus MAJ_03692 I
X797_003437 Metarhizium robertsii X797_003437 I
MCYG_07723 Microsporum canis MCYG_07723 I
MYCTH_2302052 Myceliophthora thermophila MYCTH_2302052 I
fgenesh1_pm.sca_14_chr10_3_0000034 Nectria haematococca fgenesh1_pm.sca_14_chr10_3_0000034 I
NFIA_097820 Neosartorya fischeri CADNFIAG00008857 I
NCU03699 Neurospora crassa NCU03699 D
estExt_fgenesh3_kg.C_10150 Neurospora discreta estExt_fgenesh3_kg.C_10150 I
NEUTE1DRAFT_120248 Neurospora tetrasperma NEUTE1DRAFT_120248 I
OIDMADRAFT_154644 Oidiodendron maius OIDMADRAFT_154644 I
Pc20g10390 Penicillium chrysogenum Pc20g10390 I
PDIP_02690 Penicillium digitatum PDIP_02690 I
PEX1_035970 Penicillium expansum PEX1_035970 I
PITC_051250 Penicillium italicum PITC_051250 I
PMAA_059470 Penicillium marneffei PMAA_059470 I
PDE_06517 Penicillium oxalicum PDE_06517 I
PCH_Pc20g10390 Penicillium rubens PCH_Pc20g10390 I
U727_00434251371 Penicillium solitum U727_00434251371 I
PFICI_07570 Pestalotiopsis fici PFICI_07570 I
PODANS_2_11930 Podospora anserina PODANS_2_11930 I
Z518_09288 Rhinocladiella mackenziei Z518_09288 I
SAPIO_CDS0518 Scedosporium apiospermum SAPIO_CDS0518 I
SBOR_5756 Sclerotinia borealis SBOR_5756 I
SMAC_02564 Sordaria macrospora SMAC_02564 I
SEPMUDRAFT_146750 Sphaerulina musiva SEPMUDRAFT_146750 I
SPBR_07297 Sporothrix brasiliensis SPBR_07297 I
HMPREF1624_00616 Sporothrix schenckii HMPREF1624_00616 I
S40288_05686 Stachybotrys chartarum S40288_05686 I
S40285_08669 Stachybotrys chlorohalonata S40285_08669 I
S40285_05279 Stachybotrys chlorohalonata S40285_05279 I
PMAA_059470 Talaromyces marneffei PMAA_059470 I
TSTA_012520 Talaromyces stipitatus TSTA_012520 I
THITE_2108211 Thielavia terrestris THITE_2108211 I
UCRPA7_8393 Togninia minima UCRPA7_8393 I
VHEMI10121 Torrubiella hemipterigena VHEMI10121 I
TRIATDRAFT_163506 Trichoderma atroviride TRIATDRAFT_163506 I
TRIREDRAFT_27649 Trichoderma reesei TRIREDRAFT_27649 I
TRIVIDRAFT_175568 Trichoderma virens TRIVIDRAFT_175568 I
UREG_01543 Uncinocarpus reesii UREG_01543 I
UV8b_2720 Ustilaginoidea virens UV8b_2720 I
PV09_06044 Verruconis gallopava PV09_06044 I
VDBG_09365 Verticillium albo atrum VDBG_09365 I
VDBG_09365 Verticillium alfalfae VDBG_09365 I
VDAG_04603 Verticillium dahliae VDAG_04603 I