TRE_0001250901 (Trichobilharzia regenti)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 TRE_0001250901 T055339_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arnt
M01719_2.00 		Mus musculus
NNKCACGTGMNN
NNKCACGTGMNN		 PBM
Weirauch et al.(2014)
pTH5111 		0.857 0.870
ARNT
M08732_2.00 		Homo sapiens
NKRCGTGMN
NKCACGYMN		 Misc
Kulakovskiy et al.(2013)
ARNT_HUMAN.H11MO.0.B 		0.857 0.870
ARNT
M09459_2.00 		Homo sapiens
KCACGTNN
NNACGTGM		 Misc
Heinz et al.(2010)
T47D-HIF1b_GSE59937 		0.857 0.870
ARNT
M09863_2.00 		Homo sapiens
NVNNNCACGTGNHHHN
NDDDNCACGTGNNNBN		 Transfac
Matys et al.(2006)
V$ARNT_01 		0.857 0.870
ARNT
M09864_2.00 		Homo sapiens
VVNNNRKCACGTGMYNNNBB
VVNNNRKCACGTGMYNNNBB		 Transfac
Matys et al.(2006)
V$ARNT_02 		0.857 0.870
ARNT
M09865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARNT_Q6_01 		0.857 0.870
ARNT
M09866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARNT_Q6 		0.857 0.870
tgo
M06005_2.00 		Drosophila melanogaster
RDDTCGTGAYY
RRTCACGAHHY		 B1H
Zhu et al.(2011)
dys_tgo_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06006_2.00 		Drosophila melanogaster
SDTTGCGTGAC
GTCACGCAAHS		 B1H
Zhu et al.(2011)
ss_tgo_SANGER_10_FBgn0015014 		0.857 0.833
tgo
M06007_2.00 		Drosophila melanogaster
KCACGTGAC
GTCACGTGM		 B1H
Zhu et al.(2011)
tgo_cyc_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06008_2.00 		Drosophila melanogaster
RTACGTGAC
GTCACGTAY		 B1H
Zhu et al.(2011)
tgo_sima_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06009_2.00 		Drosophila melanogaster
VWACGTGACY
RGTCACGTWB		 B1H
Zhu et al.(2011)
tgo_sim_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06010_2.00 		Drosophila melanogaster
TGCGTGAC
GTCACGCA		 B1H
Zhu et al.(2011)
tgo_ss_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06011_2.00 		Drosophila melanogaster
RCACGTGAC
GTCACGTGY		 B1H
Zhu et al.(2011)
tgo_tai_SANGER_5_FBgn0015014 		0.857 0.833
tgo
M06012_2.00 		Drosophila melanogaster
VTACGTGACB
VGTCACGTAB		 B1H
Zhu et al.(2011)
tgo_trh_SANGER_5_FBgn0015014 		0.857 0.833
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0001250901-mRNA-1 bHLH 19 72

Links

Other bHLH family TFs
Other Trichobilharzia regenti TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g04605 Acanthocheilonema viteae nAv.1.0.1.g04605 I 0.000
ANCCAN_03294 Ancylostoma caninum ANCCAN_03294 I 0.000
ANCCEY_09166 Ancylostoma ceylanicum ANCCEY_09166 I 0.000
ACOC_0001241401 Angiostrongylus costaricensis ACOC_0001241401 I 0.000
ASIM_0000214101 Anisakis simplex ASIM_0000214101 I 0.000
Bm3413 Brugia malayi Bm3413 I 0.000
BTMF_0000787301 Brugia timori BTMF_0000787301 I 0.000
CBN32559 Caenorhabditis brenneri CBN32559 I 0.000
CBN02465 Caenorhabditis brenneri CBN02465 I 0.000
CBN01920 Caenorhabditis brenneri CBN01920 I 0.000
CBG19808 Caenorhabditis briggsae CBG19808 I 0.000
ces-2 Caenorhabditis elegans WBGene00000469 D 0.000
atf-8 Caenorhabditis elegans WBGene00017535 D 0.000
CJA10655 Caenorhabditis japonica CJA10655 I 0.000
CJA08004 Caenorhabditis japonica CJA08004 I 0.000
CRE13954 Caenorhabditis remanei CRE13954 I 0.000
CRE30851 Caenorhabditis remanei CRE30851 I 0.000
nDi.2.2.2.g04619 Dirofilaria immitis nDi.2.2.2.g04619 I 0.000
EEL_0000232301 Elaeophora elaphi EEL_0000232301 I 0.000
EVEC_0000414101 Enterobius vermicularis EVEC_0000414101 N 0.000
GPUH_0001881501 Gongylonema pulchrum GPUH_0001881501 N 0.000
HPLM_0000755401 Haemonchus placei HPLM_0000755401 I 0.000
Hba_18554 Heterorhabditis bacteriophora Hba_18554 I 0.000
nLs.2.1.2.g05495 Litomosoides sigmodontis nLs.2.1.2.g05495 I 0.000
LOAG_09291 Loa loa LOAG_09291 N 0.000
WBGene00243299 Onchocerca volvulus WBGene00243299 I 0.000
L596_g3194 Steinernema carpocapsae L596_g3194 I 0.000
L889_g9945 Steinernema feltiae L889_g9945 I 0.000
L893_g26459 Steinernema glaseri L893_g26459 I 0.000
L898_g30246 Steinernema monticolum L898_g30246 I 0.000
SVUK_0000058801 Strongylus vulgaris SVUK_0000058801 I 0.000
SMUV_0001027601 Syphacia muris SMUV_0001027601 I 0.000
TCLT_0000854201 Thelazia callipaeda TCLT_0000854201 N 0.000
TCNE_0000328801 Toxocara canis TCNE_0000328801 I 0.000
WUBG_00008 Wuchereria bancrofti WUBG_00008 I 0.000