CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra016389
(
Brassica rapa
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
Bra016389
T057450_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TGA3
M01054_2.00
Arabidopsis thaliana
GMTGACG
CGTCAKC
PBM
Sullivan et al.(2014)
pTH8819
0.804
0.980
TGA3
M06750_2.00
Arabidopsis thaliana
DRTGACGTCAKCD
HGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA3_colamp_a
0.804
0.980
TGA3
M06751_2.00
Arabidopsis thaliana
DRTGACGTCAKCDD
HHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA3_col
0.804
0.980
TGA3
M09905_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA3_Q2
0.804
0.980
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra016389.1-P
bZIP
85
135
QINDKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQ
Links
Other
bZIP
family TFs
Other
Brassica rapa
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy