Carubv10003744m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10003744m.g T071549_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TGA10
M06783_2.00 		Arabidopsis thaliana
NVTGACGTCAKCDNH
DNHGMTGACGTCABN		 Dap-seq
OMalley et al.(2016)
TGA10_col_a 		0.806 1.000
TGA10
M06784_2.00 		Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH		 Dap-seq
OMalley et al.(2016)
TGA10_colamp_a 		0.806 1.000
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003744m bZIP 118 167

Links

Other bZIP family TFs
Other Capsella rubella TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I 0.806
TGA10 Arabidopsis thaliana AT5G06839 D 0.806
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I 0.806
Bo3g004060 Brassica oleracea Bo3g004060 I 0.806
Bo9g175780 Brassica oleracea Bo9g175780 I 0.806
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I 0.806
orange1.1g018357m.g Citrus sinensis orange1.1g018357m.g I 0.787
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I 0.806
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I 0.805
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I 0.806
GLYMA03G29825 Glycine max GLYMA03G29825 I 0.805
GLYMA19G32715 Glycine max GLYMA19G32715 I 0.805
LPERR05G14450 Leersia perrieri LPERR05G14450 I 0.805
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I 0.802
OBART05G18270 Oryza barthii OBART05G18270 I 0.805
OB05G26080 Oryza brachyantha OB05G26080 I 0.805
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I 0.805
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I 0.805
BGIOSGA019942 Oryza indica BGIOSGA019942 I 0.805
OLONG_005656 Oryza longistaminata OLONG_005656 I 0.805
OMERI05G15750 Oryza meridionalis OMERI05G15750 I 0.805
ONIVA05G19180 Oryza nivara ONIVA05G19180 I 0.805
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I 0.805
OS05G0443900 Oryza sativa OS05G0443900 I 0.805
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I 0.805
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.802
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I 0.806
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I 0.805
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I 0.806
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.802