AT3G53600 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT3G53600 T080861_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M00858_2.00		 Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18		 (Direct) (Direct)
AT3G53600
M01856_2.00		 Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.717
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.761 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00858_2.00 C2H2 ZF 49 71
M00858_2.00 C2H2 ZF 93 115
M01856_2.00 C2H2 ZF 49 71
M01856_2.00 C2H2 ZF 93 115

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G53600.1 C2H2 ZF 49 71
AT3G53600.1 C2H2 ZF 93 115

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBA_09380 Beauveria bassiana BBA_09380 N 0.000
CPUR_04268 Claviceps purpurea CPUR_04268 N 0.000
CFIO01_02535 Colletotrichum fioriniae CFIO01_02535 N 0.000
CGGC5_7905 Colletotrichum gloeosporioides CGGC5_7905 N 0.000
GLRG_08213 Colletotrichum graminicola GLRG_08213 N 0.000
CH063_12002 Colletotrichum higginsianum CH063_12002 N 0.000
Cob_06895 Colletotrichum orbiculare Cob_06895 N 0.000
CSUB01_08191 Colletotrichum sublineola CSUB01_08191 N 0.000
CCM_08564 Cordyceps militaris CCM_08564 N 0.000
FFUJ_09949 Fusarium fujikuroi FFUJ_09949 N 0.000
FGRRES_04459 Fusarium graminearum FGRRES_04459 N 0.000
FOXG_13751 Fusarium oxysporum FOXG_13751 N 0.000
FPSE_09905 Fusarium pseudograminearum FPSE_09905 N 0.000
NechaG95819 Fusarium solani NechaG95819 N 0.000
FVEG_11185 Fusarium verticillioides FVEG_11185 N 0.000
GGTG_02165 Gaeumannomyces graminis GGTG_02165 N 0.000
MAM_07880 Metarhizium album MAM_07880 N 0.000
MANI_115749 Metarhizium anisopliae MANI_115749 N 0.000
MBR_01746 Metarhizium brunneum MBR_01746 N 0.000
MGU_02426 Metarhizium guizhouense MGU_02426 N 0.000
MAJ_04177 Metarhizium majus MAJ_04177 N 0.000
X797_002271 Metarhizium robertsii X797_002271 N 0.000
fgenesh1_pm.sca_11_chr8_3_0000161 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000161 N 0.000
OCS_01728 Ophiocordyceps sinensis OCS_01728 N 0.000
S40288_00719 Stachybotrys chartarum S40288_00719 N 0.000
S40285_04994 Stachybotrys chlorohalonata S40285_04994 N 0.000
UV8b_1420 Ustilaginoidea virens UV8b_1420 N 0.000
VDBG_02844 Verticillium alfalfae VDBG_02844 N 0.000
VDAG_03761 Verticillium dahliae VDAG_03761 N 0.000