Bra002438 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra002438 T081880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP2
M06820_2.00 		Arabidopsis thaliana
YAGATAHMACCTNHNHND
HNDNDNAGGTKDTATCTR		 Dap-seq
OMalley et al.(2016)
At5g22890_col_a 		0.822 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002438.1-P C2H2 ZF 308 330
Bra002438.1-P C2H2 ZF 331 360

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_6001805 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001805 I 0.822
STOP2 Arabidopsis thaliana AT5G22890 D 0.822
Bostr.10199s0156 Boechera stricta Bostr.10199s0156 I 0.802
Bo2g024530 Brassica oleracea Bo2g024530 I 0.822
Bo2g024540 Brassica oleracea Bo2g024540 I 0.822
Bo9g148080 Brassica oleracea Bo9g148080 I 0.822
Bo9g148110 Brassica oleracea Bo9g148110 I 0.802
Cagra.3954s0025 Capsella grandiflora Cagra.3954s0025 I 0.822
Carubv10002559m.g Capsella rubella Carubv10002559m.g I 0.822
Thhalv10013882m.g Eutrema salsugineum Thhalv10013882m.g I 0.822