Bra004050 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra004050 T081888_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.803 0.977
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.803 0.977
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004050.1-P C2H2 ZF 147 168
Bra004050.1-P C2H2 ZF 168 194

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.000
MDP0000123878 Malus domestica MDP0000123878 I 0.000
MDP0000152718 Malus domestica MDP0000152718 I 0.000
MDP0000726295 Malus domestica MDP0000726295 I 0.000