Bra010922 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra010922 T081905_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.827 0.957
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.827 0.957
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.827 0.957
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.820 0.913
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.791 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.783 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.783 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.776 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010922.1-P C2H2 ZF 88 110
Bra010922.1-P C2H2 ZF 143 165

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000016202 Astyanax mexicanus ENSAMXG00000016202 I 0.000
BGLB008554 Biomphalaria glabrata BGLB008554 I 0.000
dpl-1 Caenorhabditis elegans WBGene00001061 D 0.000
CapteG228062 Capitella teleta CapteG228062 I 0.000
gw1.2.505.1 Chlorella NC64A gw1.2.505.1 I 0.000
CGI_10012373 Crassostrea gigas CGI_10012373 I 0.000
Chro.80214 Cryptosporidium hominis Chro.80214 I 0.000
CMU_025820 Cryptosporidium muris CMU_025820 I 0.000
tfdp1b Danio rerio ENSDARG00000016304 I 0.000
DME_0000497501 Dracunculus medinensis DME_0000497501 I 0.000
GF11948 Drosophila ananassae FBgn0088987 I 0.000
GG20367 Drosophila erecta FBgn0112558 I 0.000
GH20730 Drosophila grimshawi FBgn0128193 I 0.000
Dp Drosophila melanogaster FBgn0011763 I 0.000
GI20813 Drosophila mojavensis FBgn0143548 I 0.000
GA18332 Drosophila pseudoobscura FBgn0078337 I 0.000
GM21454 Drosophila sechellia FBgn0176335 I 0.000
GD10952 Drosophila simulans FBgn0182715 I 0.000
GJ20546 Drosophila virilis FBgn0207686 I 0.000
GK22007 Drosophila willistoni FBgn0223992 I 0.000
GE12526 Drosophila yakuba FBgn0230263 I 0.000
LotgiG114027 Lottia gigantea LotgiG114027 I 0.000
LjSGA_030786.1 Lotus japonicus LjSGA_030786.1 I 0.000
LCUP009030 Lucilia cuprina LCUP009030 I 0.000
MESCA004548 Megaselia scalaris MESCA004548 I 0.000
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0 I 0.000
ML07764a Mnemiopsis leidyi ML07764a I 0.000
MDOA008269 Musca domestica MDOA008269 I 0.000
Ogr00419 Ophisaurus gracilis Ogr00419 I 0.000
OLONG_008291 Oryza longistaminata OLONG_008291 I 0.000
OSTLU_38105 Ostreococcus lucimarinus OSTLU_38105 I 0.000
fgenesh1_pm.chr_10_#_45 Ostreococcus RCC809 fgenesh1_pm.chr_10_#_45 I 0.000
PHUM136260 Pediculus humanus PHUM136260 I 0.000
ENSPMAG00000005432 Petromyzon marinus ENSPMAG00000005432 I 0.000
Pvit_13706 Pogona vitticeps Pvit_13706 I 0.000
Sakowv30008448m.g Saccoglossus kowalevskii Sakowv30008448m.g I 0.000
SPU_006312 Strongylocentrotus purpuratus SPU_006312 I 0.000
SPU_007710 Strongylocentrotus purpuratus SPU_007710 I 0.000
AMSG_04730 Thecamonas trahens AMSG_04730 I 0.000
TVAG_077130 Trichomonas vaginalis TVAG_077130 I 0.000
TMUE_s0088001900 Trichuris muris TMUE_s0088001900 I 0.000
D918_07169 Trichuris suis D918_07169 I 0.000
TTRE_0000680801 Trichuris trichiura TTRE_0000680801 I 0.000
Traes_3DL_1E9DECCEA Triticum aestivum Traes_3DL_1E9DECCEA I 0.000
Traes_3AL_D7DE23839 Triticum aestivum Traes_3AL_D7DE23839 I 0.000