CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra018817 *(Brassica rapa)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	Bra018817	T081926_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.788	0.826
ZAT6 M00861_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Franco-Zorrilla et al.(2014) ZAT6	0.788	0.783
ZAT10 M01852_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7255	0.781	0.783
ZAT10 M06799_2.00	Arabidopsis thaliana	WSHHCACT	AGTGDDSW	Dap-seq OMalley et al.(2016) STZ_colamp_a	0.781	0.783
ZAT10 M06800_2.00	Arabidopsis thaliana	YWSHNHCASTN	NASTGDNDSWR	Dap-seq OMalley et al.(2016) STZ_col	0.781	0.783
AZF1 M01860_2.00	Arabidopsis thaliana	NWSYDNN	NNHRSWN	PBM Weirauch et al.(2014) pTH7163	0.776	0.761
AZF1 M06826_2.00	Arabidopsis thaliana	WCACTVWCWNH	DNWGWBAGTGW	Dap-seq OMalley et al.(2016) AZF1_colamp_a	0.776	0.761
ZAT9 M06817_2.00	Arabidopsis thaliana	YTACTWHH	DDWAGTAR	Dap-seq OMalley et al.(2016) At3g60580_col_a	0.775	0.739
ZAT4 M01168_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Lambert et al.(2019) pTH11142	0.775	0.717
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Brassica rapa* TFs

173 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
H311_03668	Anncaliia algerae	H311_03668	I	0.000
H311_03229	Anncaliia algerae	H311_03229	I	0.000
Brh_R011000	Buceros rhinoceros	Brh_R011000	I	0.000
EDEG_01732	Edhazardia aedis	EDEG_01732	I	0.000
CAD25705	Encephalitozoon cuniculi	CAD25705	N	0.000
EHEL_071720	Encephalitozoon hellem	EHEL_071720	N	0.000
Eint_071710	Encephalitozoon intestinalis	Eint_071710	N	0.000
EROM_071660	Encephalitozoon romaleae	EROM_071660	N	0.000
ENSGMOG00000001540	Gadus morhua	ENSGMOG00000001540	I	0.000
SRF	Gorilla gorilla	ENSGGOG00000006293	I	0.000
NBO_404g0004	Nosema bombycis	NBO_404g0004	I	0.000
NBO_73g0004	Nosema bombycis	NBO_73g0004	I	0.000
NBO_81g0015	Nosema bombycis	NBO_81g0015	I	0.000
NCER_102270	Nosema ceranae	NCER_102270	I	0.000
ENSOPRG00000002509	Ochotona princeps	ENSOPRG00000002509	I	0.000
SLOPH_1335	Spraguea lophii	SLOPH_1335	I	0.000
THOM_1181	Trachipleistophora hominis	THOM_1181	I	0.000
VCUG_02078	Vavraia culicis	VCUG_02078	I	0.000
SRF	Vicugna pacos	ENSVPAG00000008912	I	0.000