Bra030981 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra030981 T081955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.806 0.870
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.806 0.870
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.770 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.765 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.765 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.765 0.739
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030981.1-P C2H2 ZF 49 71
Bra030981.1-P C2H2 ZF 96 118

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

349 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018009 Ailuropoda melanoleuca ENSAMEG00000018009 I 0.000
ENSP00000362748-D1 Bos grunniens ENSP00000362748-D1 I 0.000
TET1 Bos taurus ENSBTAG00000037756 I 0.000
TET1 Callithrix jacchus ENSCJAG00000019005 I 0.000
TET1 Canis familiaris ENSCAFG00000013739 I 0.000
TET1 Cavia porcellus ENSCPOG00000009306 I 0.000
ENSCSAG00000007633 Chlorocebus sabaeus ENSCSAG00000007633 I 0.000
TET1 Dasypus novemcinctus ENSDNOG00000018763 I 0.000
TET1 Echinops telfairi ENSETEG00000015118 I 0.000
ENSECAG00000015450 Equus caballus ENSECAG00000015450 I 0.000
TET1 Felis catus ENSFCAG00000012673 I 0.000
TET1 Gorilla gorilla ENSGGOG00000011822 I 0.000
TET1 Homo sapiens ENSG00000138336 D 0.000
ENSSTOG00000001527 Ictidomys tridecemlineatus ENSSTOG00000001527 I 0.000
TET1 Loxodonta africana ENSLAFG00000006171 I 0.000
TET1 Macaca mulatta ENSMMUG00000023198 I 0.000
ENSMEUG00000007667 Macropus eugenii ENSMEUG00000007667 I 0.000
TET1 Monodelphis domestica ENSMODG00000017310 I 0.000
XP_001368961.2 Monodelphis domestica XP_001368961.2 D 0.000
ENSMPUG00000012204 Mustela putorius furo ENSMPUG00000012204 I 0.000
Tet1 Mus musculus ENSMUSG00000047146 I 0.000
Myotis_brandtii_TET1_10018894 Myotis brandtii Myotis_brandtii_TET1_10018894 I 0.000
ENSNLEG00000011782 Nomascus leucogenys ENSNLEG00000011782 I 0.000
ENSOPRG00000005862 Ochotona princeps ENSOPRG00000005862 I 0.000
ENSOANG00000015049 Ornithorhynchus anatinus ENSOANG00000015049 I 0.000
TET1 Oryctolagus cuniculus ENSOCUG00000013277 I 0.000
TET1 Otolemur garnettii ENSOGAG00000034454 I 0.000
ENSOARG00000005141 Ovis aries ENSOARG00000005141 I 0.000
TET1 Pan troglodytes ENSPTRG00000002558 I 0.000
ENSPANG00000022122 Papio anubis ENSPANG00000022122 I 0.000
ENSPPYG00000002393 Pongo abelii ENSPPYG00000002393 I 0.000
TET1 Procavia capensis ENSPCAG00000007795 I 0.000
TET1 Pteropus vampyrus ENSPVAG00000003593 I 0.000
Tet1 Rattus norvegicus ENSRNOG00000000277 I 0.000
TET1 Sorex araneus ENSSARG00000011693 I 0.000
ENSTSYG00000006963 Tarsius syrichta ENSTSYG00000006963 I 0.000
TET1 Tursiops truncatus ENSTTRG00000001566 I 0.000
TET1 Vicugna pacos ENSVPAG00000011820 I 0.000