CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000004952
(
Astyanax mexicanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSAMXG00000004952
T087119_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.784
0.939
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.784
0.939
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.784
0.939
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.784
0.939
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.784
0.939
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.784
0.939
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.784
0.939
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.784
0.939
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.784
0.939
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.784
0.939
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.784
0.939
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.784
0.939
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.784
0.939
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.784
0.939
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.784
0.939
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.784
0.930
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000005078
C2H2 ZF
511
533
YECNVCSKTFGQLSNLKVHLRVH
ENSAMXP00000005078
C2H2 ZF
539
561
FKCQTCNKGFTQLAHLQKHYLVH
ENSAMXP00000005078
C2H2 ZF
567
589
HECQVCHKRFSSTSNLKTHLRLH
ENSAMXP00000005078
C2H2 ZF
595
617
YQCKLCPAKFTQFVHLKLHKRLH
ENSAMXP00000005078
C2H2 ZF
623
644
HKCPHCHRNYIHLCSLRLHLKG
Links
Other
C2H2 ZF
family TFs
Other
Astyanax mexicanus
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000014864
Ailuropoda melanoleuca
ENSAMEG00000014864
I
Alligator_sinensis_CCG001391.4
Alligator sinensis
Alligator_sinensis_CCG001391.4
I
MAZ
Anolis carolinensis
ENSACAG00000014698
I
MAZ
Cavia porcellus
ENSCPOG00000019886
I
ENSECAG00000024341
Equus caballus
ENSECAG00000024341
I
ENSGMOG00000001761
Gadus morhua
ENSGMOG00000001761
I
ENSGACG00000014840
Gasterosteus aculeatus
ENSGACG00000014840
I
MAZ
Homo sapiens
ENSG00000103495
D
ENSSTOG00000027842
Ictidomys tridecemlineatus
ENSSTOG00000027842
I
Maz
Mus musculus
ENSMUSG00000030678
D
Myotis_brandtii_MAZ_10014461
Myotis brandtii
Myotis_brandtii_MAZ_10014461
I
ENSNLEG00000007559
Nomascus leucogenys
ENSNLEG00000007559
I
MAZ
Otolemur garnettii
ENSOGAG00000033940
I
MAZ
Pan troglodytes
ENSPTRG00000007968
I
Pvit_12096
Pogona vitticeps
Pvit_12096
I
Maz
Rattus norvegicus
ENSRNOG00000055082
I
ENSSHAG00000009478
Sarcophilus harrisii
ENSSHAG00000009478
I
MAZ
Sus scrofa
ENSSSCG00000025321
I