CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PRDM1
(
Callithrix jacchus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCJAG00000006332
T089333_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.827
0.991
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.825
0.991
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.825
0.991
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.825
0.991
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.825
0.991
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.825
0.991
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.825
0.991
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.825
0.991
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.825
0.991
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.825
0.991
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.825
0.991
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.825
0.991
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.825
0.991
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.825
0.991
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.825
0.991
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.825
0.991
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000011698
C2H2 ZF
441
463
YECNVCAKTFGQLSNLKVHLRVH
ENSCJAP00000011698
C2H2 ZF
469
491
FKCQTCNKGFTQLAHLQKHYLVH
ENSCJAP00000011698
C2H2 ZF
497
519
HECQVCHKRFSSTSNLKTHLRLH
ENSCJAP00000011698
C2H2 ZF
525
547
YQCKVCPAKFTQFVHLKLHKRLH
ENSCJAP00000011698
C2H2 ZF
553
574
HKCAQCHKNYIHLCSLKVHLKG
ENSCJAP00000011710
C2H2 ZF
575
597
YECNVCAKTFGQLSNLKVHLRVH
ENSCJAP00000011710
C2H2 ZF
603
625
FKCQTCNKGFTQLAHLQKHYLVH
ENSCJAP00000011710
C2H2 ZF
631
653
HECQVCHKRFSSTSNLKTHLRLH
ENSCJAP00000011710
C2H2 ZF
659
681
YQCKVCPAKFTQFVHLKLHKRLH
ENSCJAP00000011710
C2H2 ZF
687
708
HKCAQCHKNYIHLCSLKVHLKG
ENSCJAP00000041972
C2H2 ZF
538
560
YECNVCAKTFGQLSNLKVHLRVH
ENSCJAP00000041972
C2H2 ZF
566
588
FKCQTCNKGFTQLAHLQKHYLVH
ENSCJAP00000041972
C2H2 ZF
594
616
HECQVCHKRFSSTSNLKTHLRLH
ENSCJAP00000041972
C2H2 ZF
622
644
YQCKVCPAKFTQFVHLKLHKRLH
ENSCJAP00000041972
C2H2 ZF
650
671
HKCAQCHKNYIHLCSLKVHLKG
Links
Other
C2H2 ZF
family TFs
Other
Callithrix jacchus
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG003245.1
Alligator sinensis
Alligator_sinensis_CCG003245.1
I
ENSAPLG00000011008
Anas platyrhynchos
ENSAPLG00000011008
I
ENSAMXG00000017946
Astyanax mexicanus
ENSAMXG00000017946
I
ENSBTAP00000035733-D1
Bos grunniens
ENSBTAP00000035733-D1
I
ZBTB7A
Bos taurus
ENSBTAG00000020117
I
ZBTB7A
Callithrix jacchus
ENSCJAG00000036210
I
ZBTB7A
Canis familiaris
ENSCAFG00000024335
I
ENSCPOG00000024829
Cavia porcellus
ENSCPOG00000024829
I
Cmyd_10015601
Chelonia mydas
Cmyd_10015601
I
ENSCSAG00000010775
Chlorocebus sabaeus
ENSCSAG00000010775
I
zbtb7a
Danio rerio
ENSDARG00000039899
I
ENSFALG00000000874
Ficedula albicollis
ENSFALG00000000874
I
ENSGMOG00000008925
Gadus morhua
ENSGMOG00000008925
I
zbtb7a
Gasterosteus aculeatus
ENSGACG00000012730
I
ZBTB7A
Homo sapiens
ENSG00000178951
D
ENSLOCG00000005993
Lepisosteus oculatus
ENSLOCG00000005993
I
ENSMMUG00000019103
Macaca mulatta
ENSMMUG00000019103
I
ENSMEUG00000005804
Macropus eugenii
ENSMEUG00000005804
I
ZBTB7A
Monodelphis domestica
ENSMODG00000000778
I
ENSMPUG00000004703
Mustela putorius furo
ENSMPUG00000004703
I
Zbtb7a
Mus musculus
ENSMUSG00000035011
D
Myotis_brandtii_ZBTB7A_10016304
Myotis brandtii
Myotis_brandtii_ZBTB7A_10016304
I
ZBTB7A
Myotis lucifugus
ENSMLUG00000008667
I
ENSNLEG00000003007
Nomascus leucogenys
ENSNLEG00000003007
I
Ogr12162
Ophisaurus gracilis
Ogr12162
I
ENSONIG00000004814
Oreochromis niloticus
ENSONIG00000004814
I
ZBTB7A
Ornithorhynchus anatinus
ENSOANG00000006290
I
ZBTB7A
Otolemur garnettii
ENSOGAG00000033963
I
ENSOARG00000010857
Ovis aries
ENSOARG00000010857
I
ZBTB7A
Pan troglodytes
ENSPTRG00000010292
I
ENSPANG00000010574
Papio anubis
ENSPANG00000010574
I
ENSPSIG00000017106
Pelodiscus sinensis
ENSPSIG00000017106
I
ENSPFOG00000001889
Poecilia formosa
ENSPFOG00000001889
I
Pvit_09830
Pogona vitticeps
Pvit_09830
I
Zbtb7a
Rattus norvegicus
ENSRNOG00000020161
I
ZBTB7A
Sus scrofa
ENSSSCG00000029236
I
zbtb7a
Takifugu rubripes
ENSTRUG00000017896
I
zbtb7a
Tetraodon nigroviridis
ENSTNIG00000004415
I
ZBTB7A
Tursiops truncatus
ENSTTRG00000006780
I
ENSXMAG00000012740
Xiphophorus maculatus
ENSXMAG00000012740
I