gfi1ab (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000044457 T090929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.823 0.971
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.823 0.971
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.823 0.971
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.823 0.971
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.823 0.971
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.823 0.971
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.823 0.971
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.823 0.971
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.821 0.964
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.964
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.782 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.782 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.782 0.877
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000065138 C2H2 ZF 229 252
ENSDARP00000065138 C2H2 ZF 258 280
ENSDARP00000065138 C2H2 ZF 286 308
ENSDARP00000065138 C2H2 ZF 314 336
ENSDARP00000065138 C2H2 ZF 342 364
ENSDARP00000065138 C2H2 ZF 370 393

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CAGL0M02761g Candida glabrata CAGL0M02761g I
Ecym_8316 Eremothecium cymbalariae Ecym_8316 I
KAFR_0H02660 Kazachstania africana KAFR_0H02660 I
KLLA0_D06765g Kluyveromyces lactis KLLA0_D06765g I
KLTH0D10164g Kluyveromyces thermotolerans KLTH0D10164g I
Kwal_8619 Kluyveromyces waltii Kwal_8619 I
SAKL0H07678g Lachancea kluyveri SAKL0H07678g I
LALA0_S10e01860g Lachancea lanzarotensis LALA0_S10e01860g I
KLTH0D10164g Lachancea thermotolerans KLTH0D10164g I
NCAS_0C01470 Naumovozyma castellii NCAS_0C01470 I
NDAI_0E02210 Naumovozyma dairenensis NDAI_0E02210 I
SU7_3534 Saccharomyces arboricola SU7_3534 I
25381_YPL128C Saccharomyces bayanus 25381_YPL128C I
TBF1 Saccharomyces cerevisiae YPL128C D
SKUD_201904 Saccharomyces kudriavzevii SKUD_201904 I
21800_YPL128C Saccharomyces mikatae 21800_YPL128C I
22419_YPL128C Saccharomyces paradoxus 22419_YPL128C I
TBLA_0B04080 Tetrapisispora blattae TBLA_0B04080 I
TPHA_0F03170 Tetrapisispora phaffii TPHA_0F03170 I
TPHA_0G01850 Tetrapisispora phaffii TPHA_0G01850 I
TDEL_0A05760 Torulaspora delbrueckii TDEL_0A05760 I
Kpol_530p11 Vanderwaltozyma polyspora Kpol_530p11 I
Kpol_1072p42 Vanderwaltozyma polyspora Kpol_1072p42 I
ZBAI_00516 Zygosaccharomyces bailii ZBAI_00516 I
ZBAI_05815 Zygosaccharomyces bailii ZBAI_05815 I
ZYRO0F06292g Zygosaccharomyces rouxii ZYRO0F06292g I