PRDM1 (Microcebus murinus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMICG00000010329 T098514_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY

RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.825 0.991
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN

NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.825 0.982
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT

AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.825 0.982
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN

NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.825 0.982
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY

RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.825 0.982
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN

NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.825 0.982
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC

GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.825 0.982
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT

AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.825 0.982
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY

RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.825 0.982
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY

RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.825 0.982
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN

NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.825 0.982
PRDM1
M10108_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.825 0.982
PRDM1
M10109_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.825 0.982
PRDM1
M10110_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.825 0.982
PRDM1
M10111_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.825 0.982
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN

NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.825 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000009403 C2H2 ZF 539 561
ENSMICP00000009403 C2H2 ZF 567 589
ENSMICP00000009403 C2H2 ZF 595 617
ENSMICP00000009403 C2H2 ZF 623 645
ENSMICP00000009403 C2H2 ZF 651 672

Links

Other C2H2 ZF family TFs
Other Microcebus murinus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000003053 Astyanax mexicanus ENSAMXG00000003053 N
ENSAMXG00000020861 Astyanax mexicanus ENSAMXG00000020861 N
MAZ Danio rerio ENSDARG00000063555 N
maza Danio rerio ENSDARG00000087330 N
ENSGACG00000007577 Gasterosteus aculeatus ENSGACG00000007577 N
ENSGACG00000014840 Gasterosteus aculeatus ENSGACG00000014840 I
ENSORLG00000000210 Oryzias latipes ENSORLG00000000210 N
ENSPFOG00000005397 Poecilia formosa ENSPFOG00000005397 N
ENSPFOG00000016219 Poecilia formosa ENSPFOG00000016219 N
ENSTRUG00000004091 Takifugu rubripes ENSTRUG00000004091 N
si:ch211-166g5.4 Takifugu rubripes ENSTRUG00000008158 N
ENSTNIG00000001006 Tetraodon nigroviridis ENSTNIG00000001006 N
ENSXMAG00000010895 Xiphophorus maculatus ENSXMAG00000010895 N