SCRT2 (Otolemur garnettii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOGAG00000031187 T103812_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.827 0.991
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.827 0.991
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.827 0.991
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.786 0.900
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.786 0.900
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.786 0.900
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.786 0.900
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.774 0.845
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.774 0.845
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.774 0.845
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.774 0.845
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.758 0.809
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.758 0.809
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.758 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000015769 C2H2 ZF 155 177
ENSOGAP00000015769 C2H2 ZF 187 208
ENSOGAP00000015769 C2H2 ZF 212 234
ENSOGAP00000015769 C2H2 ZF 240 262
ENSOGAP00000015769 C2H2 ZF 268 286

Links

Other C2H2 ZF family TFs
Other Otolemur garnettii TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZFP30 Callithrix jacchus ENSCJAG00000009479 N 0.000
ZFP30 Cavia porcellus ENSCPOG00000007951 N 0.000
ENSCSAG00000004151 Chlorocebus sabaeus ENSCSAG00000004151 N 0.000
ZFP30 Dasypus novemcinctus ENSDNOG00000032824 N 0.000
ENSDORG00000001378 Dipodomys ordii ENSDORG00000001378 N 0.000
ZFP30 Equus caballus ENSECAG00000017215 N 0.000
ZFP30 Gorilla gorilla ENSGGOG00000016654 N 0.000
ZFP30 Homo sapiens ENSG00000120784 N 0.000
ENSSTOG00000005694 Ictidomys tridecemlineatus ENSSTOG00000005694 N 0.000
ZFP30 Loxodonta africana ENSLAFG00000004782 N 0.000
ENSMMUP00000002578 Macaca fascicularis ENSMMUP00000002578 N 0.000
ENSMMUG00000001933 Macaca mulatta ENSMMUG00000001933 N 0.000
Zfp30 Mus musculus ENSMUSG00000047473 N 0.000
Myotis_brandtii_ZFP30_10005467 Myotis brandtii Myotis_brandtii_ZFP30_10005467 N 0.000
ZFP30 Myotis lucifugus ENSMLUG00000012181 N 0.000
ENSNLEG00000016977 Nomascus leucogenys ENSNLEG00000016977 N 0.000
ZFP30 Oryctolagus cuniculus ENSOCUG00000010157 N 0.000
ZFP30 Otolemur garnettii ENSOGAG00000013495 N 0.000
ZFP30 Pan troglodytes ENSPTRG00000010914 N 0.000
ENSPANG00000019660 Papio anubis ENSPANG00000019660 N 0.000
ENSPPYG00000009918 Pongo abelii ENSPPYG00000009918 N 0.000
ZFP30 Pteropus vampyrus ENSPVAG00000006214 N 0.000
Zfp30 Rattus norvegicus ENSRNOG00000055519 N 0.000
ZFP30 Sorex araneus ENSSARG00000000413 N 0.000
ZFP30 Sus scrofa ENSSSCG00000029408 N 0.000
ENSTSYG00000010884 Tarsius syrichta ENSTSYG00000010884 N 0.000
ZFP30 Vicugna pacos ENSVPAG00000010720 N 0.000