Gli1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000025120 T109120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.827 1.000
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.827 1.000
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.827 1.000
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.827 1.000
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.827 1.000
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.827 1.000
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.827 1.000
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.796 0.886
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.796 0.886
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.796 0.886
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.796 0.886
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.796 0.886
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.796 0.886
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.851
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.851
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.851
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.851
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.851
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.851
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.851
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.851
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000009803 C2H2 ZF 236 260
ENSRNOP00000009803 C2H2 ZF 268 295
ENSRNOP00000009803 C2H2 ZF 301 325
ENSRNOP00000009803 C2H2 ZF 331 356
ENSRNOP00000009803 C2H2 ZF 362 387

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017837 Ailuropoda melanoleuca ENSAMEG00000017837 I
ENSP00000301727-D1 Bos grunniens ENSP00000301727-D1 I
E4F1 Bos taurus ENSBTAG00000009961 I
E4F1 Callithrix jacchus ENSCJAG00000015000 I
E4F1 Cavia porcellus ENSCPOG00000002052 I
ENSCSAG00000010850 Chlorocebus sabaeus ENSCSAG00000010850 I
E4F1 Dasypus novemcinctus ENSDNOG00000016503 I
E4f1 Dipodomys ordii ENSDORG00000001751 I
E4F1 Equus caballus ENSECAG00000008036 I
E4F1 Gorilla gorilla ENSGGOG00000014241 I
E4F1 Homo sapiens ENSG00000167967 D
ENSSTOG00000013171 Ictidomys tridecemlineatus ENSSTOG00000013171 I
E4F1 Loxodonta africana ENSLAFG00000000725 I
ENSP00000301727 Macaca fascicularis ENSP00000301727 I
E4F1 Macaca mulatta ENSMMUG00000019235 I
E4F1 Microcebus murinus ENSMICG00000005892 I
ENSMPUG00000015378 Mustela putorius furo ENSMPUG00000015378 I
E4f1 Mus musculus ENSMUSG00000024137 D
Myotis_brandtii_E4f1_10005619 Myotis brandtii Myotis_brandtii_E4f1_10005619 I
E4F1 Myotis lucifugus ENSMLUG00000016786 I
E4F1 Ochotona princeps ENSOPRG00000002573 I
E4F1 Oryctolagus cuniculus ENSOCUG00000025484 I
E4F1 Otolemur garnettii ENSOGAG00000006594 I
ENSOARG00000017910 Ovis aries ENSOARG00000017910 I
ENSPANG00000017016 Papio anubis ENSPANG00000017016 I
E4F1 Procavia capensis ENSPCAG00000004337 I
E4F1 Pteropus vampyrus ENSPVAG00000005098 I
E4f1 Rattus norvegicus ENSRNOG00000009224 I
E4F1 Sus scrofa ENSSSCG00000008047 I
E4F1 Tursiops truncatus ENSTTRG00000008208 I