CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF454
(
Sus scrofa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSSCG00000027351
T110561_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF454
M04571_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_1
0.798
0.971
ZNF454
M04572_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_2
0.798
0.971
ZNF454
M08346_2.00
Homo sapiens
KVVRNCHNYMRGGGCCNDGDGCCWTTB
VAAWGGCHCHNGGCCCYKRNDGNYBBM
ChIP-seq
Schmitges et al.(2016)
Q8N9F8_4-12.RCADE
0.798
0.971
ZNF454
M08256_2.00
Homo sapiens
GWGCYTT
AARGCWC
ChIP-seq
Najafabadi et al.(2015b)
ZNF454
0.798
0.971
ZNF454
M07651_2.00
Homo sapiens
CRKVVRHCCVYCRGGVCCBVGAGCCNKYB
VRMNGGCTCBVGGBCCYGRBRGDYBBMYG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF454.MEME.OriginalMapping
0.798
0.971
ZNF454
M04573_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_1
0.798
0.971
ZNF454
M04574_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_2
0.798
0.971
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000022620
C2H2 ZF
182
204
FVCSECGKVFTKSSALNKHQKTH
ENSSSCP00000022620
C2H2 ZF
221
243
YECRECGKAFHQSTHLIHHQRIH
ENSSSCP00000022620
C2H2 ZF
249
271
YECKECGKAFSVSSSLTYHQKIH
ENSSSCP00000022620
C2H2 ZF
277
299
FECKLCGKAFIRNIHLAHHHRIH
ENSSSCP00000022620
C2H2 ZF
305
327
FQCNICDKAFVCRAHLTKHQNIH
ENSSSCP00000022620
C2H2 ZF
333
355
YKCNECGKAFNQSTSFLQHQRIH
ENSSSCP00000022620
C2H2 ZF
361
383
FECNECGKAFRVNSSLTEHQRIH
ENSSSCP00000022620
C2H2 ZF
389
411
YKCSECGKAFRDNSSFARHRKIH
ENSSSCP00000022620
C2H2 ZF
417
439
YRCGLCEKAFRDQSALAQHQRIH
ENSSSCP00000022620
C2H2 ZF
445
467
YTCNICEKAFSDHSALTQHKRIH
ENSSSCP00000022620
C2H2 ZF
473
495
YKCKICEKAFIRSTHLTQHQRIH
ENSSSCP00000022620
C2H2 ZF
501
523
YKCNKCGKAFNQTANLIQHQRHH
Links
Other
C2H2 ZF
family TFs
Other
Sus scrofa
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy