gfi1ab (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000000651 T111891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.814 0.957
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.814 0.957
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.814 0.957
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.814 0.957
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.814 0.957
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.814 0.957
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.814 0.957
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.814 0.957
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.812 0.949
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.786 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.786 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.786 0.891
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.884
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.777 0.949
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002442 C2H2 ZF 227 250
ENSTNIP00000002442 C2H2 ZF 256 278
ENSTNIP00000002442 C2H2 ZF 284 306
ENSTNIP00000002442 C2H2 ZF 312 334
ENSTNIP00000002442 C2H2 ZF 340 362
ENSTNIP00000002442 C2H2 ZF 368 391

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATNIG1 Arabidopsis lyrata Al_scaffold_0008_132 I
BHLH28 Arabidopsis thaliana AT5G46830 D
Bostr.28243s0053 Boechera stricta Bostr.28243s0053 I
Eucgr.B00713 Eucalyptus grandis Eucgr.B00713 I
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I
MDP0000907218 Malus domestica MDP0000907218 N
MDP0000788304 Malus domestica MDP0000788304 N
MDP0000710285 Malus domestica MDP0000710285 I
MDP0000442310 Malus domestica MDP0000442310 I
MDP0000183948 Malus domestica MDP0000183948 I
MDP0000140864 Malus domestica MDP0000140864 N
MDP0000137325 Malus domestica MDP0000137325 I
MDP0000135282 Malus domestica MDP0000135282 N
MTR_8g024770 Medicago truncatula MTR_8g024770 I
MTR_8g024790 Medicago truncatula MTR_8g024790 I
Pm028604 Prunus mume Pm028604 I
Pm023735 Prunus mume Pm023735 I
Pm029399 Prunus mume Pm029399 I
Pm028607 Prunus mume Pm028607 I
Pm028606 Prunus mume Pm028606 I
Pm028605 Prunus mume Pm028605 I
Pm023738 Prunus mume Pm023738 I
PRUPE_ppa027182mg Prunus persica PRUPE_ppa027182mg I
PRUPE_ppa025417mg Prunus persica PRUPE_ppa025417mg I
PRUPE_ppa022201mg Prunus persica PRUPE_ppa022201mg I
PRUPE_ppa022165mg Prunus persica PRUPE_ppa022165mg I
PRUPE_ppa016220mg Prunus persica PRUPE_ppa016220mg I
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I