CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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prdm1a
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000003926
T111952_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000003375
C2H2 ZF
394
416
YECNVCSKTFGQLSNLKVHLRVH
ENSTNIP00000003375
C2H2 ZF
422
444
FKCQTCNKGFTQLAHLQKHYLVH
ENSTNIP00000003375
C2H2 ZF
450
472
HECQVCHKRFSSTSNLKTHLRLH
ENSTNIP00000003375
C2H2 ZF
478
500
YHCKLCPAKFTQFVHLKLHKRLH
ENSTNIP00000003375
C2H2 ZF
506
527
HKCPHCHRLYIHLVALRLHLKG
ENSTNIP00000006534
C2H2 ZF
404
426
YECNVCSKTFGQLSNLKVHLRVH
ENSTNIP00000006534
C2H2 ZF
432
454
FKCQTCNKGFTQLAHLQKHYLVH
ENSTNIP00000006534
C2H2 ZF
460
482
HECQVCHKRFSSTSNLKTHLRLH
ENSTNIP00000006534
C2H2 ZF
488
510
YHCKLCPAKFTQFVHLKLHKRLH
ENSTNIP00000006534
C2H2 ZF
516
537
HKCPHCHRLYIHLVALRLHLKG
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000018298
Poecilia formosa
ENSPFOG00000018298
N
0.783
ENSXMAG00000013351
Xiphophorus maculatus
ENSXMAG00000013351
N
0.783