bcl11ab (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000012076 T112075_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.815 0.939
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.815 0.939
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.815 0.939
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.811 0.921
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.811 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001110 C2H2 ZF 212 233
ENSTNIP00000001110 C2H2 ZF 239 261
ENSTNIP00000001110 C2H2 ZF 519 541
ENSTNIP00000001110 C2H2 ZF 547 569
ENSTNIP00000001110 C2H2 ZF 577 600
ENSTNIP00000015040 C2H2 ZF 455 476
ENSTNIP00000015040 C2H2 ZF 482 504
ENSTNIP00000015040 C2H2 ZF 758 780
ENSTNIP00000015040 C2H2 ZF 786 808
ENSTNIP00000015040 C2H2 ZF 816 839

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015776 Ailuropoda melanoleuca ENSAMEG00000015776 I
ENSAMEG00000018305 Ailuropoda melanoleuca ENSAMEG00000018305 I
Alligator_sinensis_CCG014115.1 Alligator sinensis Alligator_sinensis_CCG014115.1 I
ENSAPLG00000010950 Anas platyrhynchos ENSAPLG00000010950 I
PROX1 Anolis carolinensis ENSACAG00000006174 I
AARA009757 Anopheles arabiensis AARA009757 I
ACUA003826 Anopheles culicifacies ACUA003826 I
AEPI001687 Anopheles epiroticus AEPI001687 I
AMIN002618 Anopheles minimus AMIN002618 I
Afo_R004723 Aptenodytes forsteri Afo_R004723 I
ENSAMXG00000011717 Astyanax mexicanus ENSAMXG00000011717 I
ENSAMXG00000014376 Astyanax mexicanus ENSAMXG00000014376 I
ENSBTAP00000014573-D1 Bos grunniens ENSBTAP00000014573-D1 I
PROX1 Bos taurus ENSBTAG00000010978 I
e_gw.483.46.1 Branchiostoma floridae e_gw.483.46.1 I
Brh_R001903 Buceros rhinoceros Brh_R001903 I
Brh_R009461 Buceros rhinoceros Brh_R009461 I
PROX1 Callithrix jacchus ENSCJAG00000015514 I
PROX2 Callithrix jacchus ENSCJAG00000020548 I
Aan_R011488 Calypte anna Aan_R011488 I
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I
PROX1 Canis familiaris ENSCAFG00000012445 I
PROX2 Canis familiaris ENSCAFG00000016985 I
PROX2 Cavia porcellus ENSCPOG00000009322 I
PROX1 Cavia porcellus ENSCPOG00000011987 I
Cmyd_10008872 Chelonia mydas Cmyd_10008872 I
Cmyd_10014540 Chelonia mydas Cmyd_10014540 I
ENSCSAG00000012283 Chlorocebus sabaeus ENSCSAG00000012283 I
ENSCSAG00000015530 Chlorocebus sabaeus ENSCSAG00000015530 I
PROX2 Choloepus hoffmanni ENSCHOG00000000477 I
ENSCING00000013650 Ciona intestinalis ENSCING00000013650 N
ENSCSAVG00000007613 Ciona savignyi ENSCSAVG00000007613 N
prox2 Danio rerio ENSDARG00000041952 I
prox1a Danio rerio ENSDARG00000055158 I
prox1b Danio rerio ENSDARG00000088810 I
PROX1 Dasypus novemcinctus ENSDNOG00000001297 I
PROX2 Dasypus novemcinctus ENSDNOG00000005528 I
YQE_10516 Dendroctonus ponderosae YQE_10516 I
Prox1 Dipodomys ordii ENSDORG00000007622 I
PROX1 Echinops telfairi ENSETEG00000010042 I
PROX1 Equus caballus ENSECAG00000019220 I
ENSECAG00000023529 Equus caballus ENSECAG00000023529 I
PROX2 Felis catus ENSFCAG00000028658 I
PROX1 Felis catus ENSFCAG00000029702 I
ENSFALG00000006312 Ficedula albicollis ENSFALG00000006312 I
ENSFALG00000012357 Ficedula albicollis ENSFALG00000012357 I
ENSGMOG00000001679 Gadus morhua ENSGMOG00000001679 I
ENSGMOG00000009022 Gadus morhua ENSGMOG00000009022 I
ENSGMOG00000015166 Gadus morhua ENSGMOG00000015166 I
PROX1 Gallus gallus ENSGALG00000009791 I
ENSGALG00000023113 Gallus gallus ENSGALG00000023113 N
prox2 Gasterosteus aculeatus ENSGACG00000007538 I
prox1a Gasterosteus aculeatus ENSGACG00000010140 I
ENSGACG00000010545 Gasterosteus aculeatus ENSGACG00000010545 I
Gfo_R010932 Geospiza fortis Gfo_R010932 I
PROX1 Gorilla gorilla ENSGGOG00000015130 I
PROX2 Gorilla gorilla ENSGGOG00000022893 I
PROX1 Homo sapiens ENSG00000117707 D
ENSSTOG00000023253 Ictidomys tridecemlineatus ENSSTOG00000023253 I
ENSSTOG00000026238 Ictidomys tridecemlineatus ENSSTOG00000026238 I
ENSLACG00000013691 Latimeria chalumnae ENSLACG00000013691 I
ENSLACG00000018909 Latimeria chalumnae ENSLACG00000018909 I
ENSLOCG00000010701 Lepisosteus oculatus ENSLOCG00000010701 I
PROX1 Loxodonta africana ENSLAFG00000006344 I
PROX2 Loxodonta africana ENSLAFG00000012545 I
ENSP00000355925 Macaca fascicularis ENSP00000355925 I
PROX1 Macaca mulatta ENSMMUG00000011914 I
ENSMEUG00000002316 Macropus eugenii ENSMEUG00000002316 I
ENSMEUG00000013465 Macropus eugenii ENSMEUG00000013465 I
PROX1 Meleagris gallopavo ENSMGAG00000009635 I
PROX2 Meleagris gallopavo ENSMGAG00000012715 N
PROX1 Microcebus murinus ENSMICG00000011593 I
ENSMPUG00000009289 Mustela putorius furo ENSMPUG00000009289 I
ENSMPUG00000013456 Mustela putorius furo ENSMPUG00000013456 I
Prox1 Mus musculus ENSMUSG00000010175 I
Prox2 Mus musculus ENSMUSG00000042320 I
PROX2 Myotis lucifugus ENSMLUG00000005898 I
PROX1 Myotis lucifugus ENSMLUG00000006993 I
ENSNLEG00000014435 Nomascus leucogenys ENSNLEG00000014435 I
PROX1 Ochotona princeps ENSOPRG00000005115 I
PROX2 Ochotona princeps ENSOPRG00000011820 I
Ogr11789 Ophisaurus gracilis Ogr11789 I
ENSONIG00000013518 Oreochromis niloticus ENSONIG00000013518 I
ENSONIG00000015279 Oreochromis niloticus ENSONIG00000015279 I
ENSONIG00000020193 Oreochromis niloticus ENSONIG00000020193 I
PROX1 Oryctolagus cuniculus ENSOCUG00000008274 I
ENSORLG00000001996 Oryzias latipes ENSORLG00000001996 I
prox1a Oryzias latipes ENSORLG00000014947 I
PROX1 Otolemur garnettii ENSOGAG00000017025 I
ENSOARG00000001473 Ovis aries ENSOARG00000001473 I
ENSOARG00000009324 Ovis aries ENSOARG00000009324 I
PROX1 Pan troglodytes ENSPTRG00000001974 I
PROX2 Pan troglodytes ENSPTRG00000006542 I
ENSPANG00000017714 Papio anubis ENSPANG00000017714 I
ENSPANG00000024084 Papio anubis ENSPANG00000024084 I
ENSPSIG00000008098 Pelodiscus sinensis ENSPSIG00000008098 I
ENSPSIG00000017015 Pelodiscus sinensis ENSPSIG00000017015 I
ENSPFOG00000003774 Poecilia formosa ENSPFOG00000003774 I
ENSPFOG00000014635 Poecilia formosa ENSPFOG00000014635 I
ENSPFOG00000015503 Poecilia formosa ENSPFOG00000015503 I
Pvit_00353 Pogona vitticeps Pvit_00353 I
Pvit_01205 Pogona vitticeps Pvit_01205 I
ENSPPYG00000000224 Pongo abelii ENSPPYG00000000224 I
PROX2 Pteropus vampyrus ENSPVAG00000000659 I
PROX1 Pteropus vampyrus ENSPVAG00000009067 I
Prox1 Rattus norvegicus ENSRNOG00000003694 I
Prox2 Rattus norvegicus ENSRNOG00000005054 I
ENSSHAG00000016547 Sarcophilus harrisii ENSSHAG00000016547 I
ENSSHAG00000018304 Sarcophilus harrisii ENSSHAG00000018304 I
SINV18378 Solenopsis invicta SINV18378 I
PROX1 Sus scrofa ENSSSCG00000015584 I
PROX1 Taeniopygia guttata ENSTGUG00000002974 I
ENSTGUG00000012170 Taeniopygia guttata ENSTGUG00000012170 I
ENSTRUG00000012738 Takifugu rubripes ENSTRUG00000012738 I
prox1a Takifugu rubripes ENSTRUG00000013890 I
prox2 Takifugu rubripes ENSTRUG00000018353 I
ENSTSYG00000002059 Tarsius syrichta ENSTSYG00000002059 I
prox1a Tetraodon nigroviridis ENSTNIG00000016378 I
prox2 Tetraodon nigroviridis ENSTNIG00000017414 I
D918_02805 Trichuris suis D918_02805 I
PROX1 Tupaia belangeri ENSTBEG00000013162 I
PROX2 Tupaia belangeri ENSTBEG00000014423 I
PROX2 Tursiops truncatus ENSTTRG00000001912 I
PROX1 Tursiops truncatus ENSTTRG00000003405 I
Tal_R002989 Tyto alba Tal_R002989 I
PROX2 Vicugna pacos ENSVPAG00000003072 I
PROX1 Vicugna pacos ENSVPAG00000010381 I
prox1.L Xenopus laevis XB-GENE-485331 I
ENSXMAG00000003709 Xiphophorus maculatus ENSXMAG00000003709 I
ENSXMAG00000004000 Xiphophorus maculatus ENSXMAG00000004000 I
ENSXMAG00000014663 Xiphophorus maculatus ENSXMAG00000014663 I