scrt1b (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000018384 T112157_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.802 0.877
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.802 0.877
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.802 0.877
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.802 0.877
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.794 0.930
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.794 0.930
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.794 0.930
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.794 0.930
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.860
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.860
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.860
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.860
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.860
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021553 C2H2 ZF 131 153
ENSTNIP00000021553 C2H2 ZF 162 184
ENSTNIP00000021553 C2H2 ZF 188 210
ENSTNIP00000021553 C2H2 ZF 216 238
ENSTNIP00000021553 C2H2 ZF 244 265

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_021050 Aspergillus clavatus CADACLAG00002292 I 0.000
CADAFLAG00005530 Aspergillus flavus CADAFLAG00005530 I 0.000
AFUA_1G14360 Aspergillus fumigatus CADAFUAG00007111 I 0.000
ANIA_10120 Aspergillus nidulans CADANIAG00001891 D 0.000
CADANGAG00001240 Aspergillus niger CADANGAG00001240 I 0.000
CADAORAG00005134 Aspergillus oryzae CADAORAG00005134 I 0.000
EURHEDRAFT_447655 Aspergillus ruber EURHEDRAFT_447655 I 0.000
ATEG_00638 Aspergillus terreus CADATEAG00009286 I 0.000
M437DRAFT_18298 Aureobasidium melanogenum M437DRAFT_18298 I 0.000
M438DRAFT_276450 Aureobasidium pullulans M438DRAFT_276450 I 0.000
AUEXF2481DRAFT_183957 Aureobasidium subglaciale AUEXF2481DRAFT_183957 I 0.000
BDDG_03741 Blastomyces dermatitidis BDDG_03741 I 0.000
BGHDH14_bgh03978 Blumeria graminis BGHDH14_bgh03978 N 0.000
PVAR5_4079 Byssochlamys spectabilis PVAR5_4079 I 0.000
CIMG_03190 Coccidioides immitis CIMG_03190 I 0.000
CNI01500 Cryptococcus neoformans CNI01500 N 0.000
DOTSEDRAFT_128825 Dothistroma septosporum DOTSEDRAFT_128825 N 0.000
EPUS_07650 Endocarpon pusillum EPUS_07650 I 0.000
EV44_g5837 Erysiphe necator EV44_g5837 N 0.000
HCBG_01404 Histoplasma capsulatum HCBG_01404 I 0.000
MBM_04933 Marssonina brunnea MBM_04933 I 0.000
gw1.6.805.1 Mycosphaerella graminicola gw1.6.805.1 I 0.000
estExt_Genewise1Plus.C_chr_31013 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_31013 N 0.000
OIDMADRAFT_134351 Oidiodendron maius OIDMADRAFT_134351 N 0.000
PABG_06000 Paracoccidioides brasiliensis PABG_06000 I 0.000
PAAG_12029 Paracoccidioides sp lutzii PAAG_12029 I 0.000
Pc16g12950 Penicillium chrysogenum Pc16g12950 I 0.000
PDIP_66730 Penicillium digitatum PDIP_66730 I 0.000
PEX1_010850 Penicillium expansum PEX1_010850 I 0.000
PITC_091680 Penicillium italicum PITC_091680 I 0.000
PMAA_065570 Penicillium marneffei PMAA_065570 I 0.000
PDE_00300 Penicillium oxalicum PDE_00300 I 0.000
PCH_Pc16g12950 Penicillium rubens PCH_Pc16g12950 I 0.000
U727_00432720241 Penicillium solitum U727_00432720241 I 0.000
MYCFIDRAFT_140661 Pseudocercospora fijiensis MYCFIDRAFT_140661 I 0.000
MYCFIDRAFT_107328 Pseudocercospora fijiensis MYCFIDRAFT_107328 N 0.000
SEPMUDRAFT_63694 Sphaerulina musiva SEPMUDRAFT_63694 N 0.000
PMAA_065570 Talaromyces marneffei PMAA_065570 I 0.000
TSTA_085600 Talaromyces stipitatus TSTA_085600 I 0.000
Mycgr3G69836 Zymoseptoria tritici Mycgr3G69836 N 0.000
Mycgr3G21205 Zymoseptoria tritici Mycgr3G21205 I 0.000