scrt2 (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000007620 T112318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.792 0.841
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.792 0.841
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.792 0.841
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.792 0.841
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.832
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.832
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.832
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.785 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.785 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.785 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.785 0.885
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.858
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.858
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.858
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000018897 C2H2 ZF 157 179
ENSTRUP00000018897 C2H2 ZF 189 210
ENSTRUP00000018897 C2H2 ZF 214 236
ENSTRUP00000018897 C2H2 ZF 242 264
ENSTRUP00000018897 C2H2 ZF 270 291
ENSTRUP00000018898 C2H2 ZF 166 188
ENSTRUP00000018898 C2H2 ZF 198 219
ENSTRUP00000018898 C2H2 ZF 223 245
ENSTRUP00000018898 C2H2 ZF 251 273
ENSTRUP00000018898 C2H2 ZF 279 300
ENSTRUP00000018899 C2H2 ZF 151 173
ENSTRUP00000018899 C2H2 ZF 183 204
ENSTRUP00000018899 C2H2 ZF 208 230
ENSTRUP00000018899 C2H2 ZF 236 258
ENSTRUP00000018899 C2H2 ZF 264 285

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.30275s0162 Boechera stricta Bostr.30275s0162 N
BRADI3G33630 Brachypodium distachyon BRADI3G33630 N
Bra021072 Brassica rapa Bra021072 N
Cagra.0812s0002 Capsella grandiflora Cagra.0812s0002 N
Ciclev10024664m.g Citrus clementina Ciclev10024664m.g N
Thhalv10025276m.g Eutrema salsugineum Thhalv10025276m.g N
MLOC_4400 Hordeum vulgare MLOC_4400 N
Lus10000963.g Linum usitatissimum Lus10000963.g N
Lus10011020.g Linum usitatissimum Lus10011020.g N
Lus10040141.g Linum usitatissimum Lus10040141.g N
mgf005560m Mimulus guttatus mgf005560m N
Pavir.Ib02309 Panicum virgatum Pavir.Ib02309 N
Solyc08g007170.1 Solanum lycopersicum Solyc08g007170.1 N
PGSC0003DMG400020508 Solanum tuberosum PGSC0003DMG400020508 N