CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM5G885700
(
Zea mays
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
GRMZM5G885700
T118638_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM5G885700_P01
C2H2 ZF
62
86
FLCSYEGCGKTFFDAGALRKHAHVH
GRMZM5G885700_P01
C2H2 ZF
91
115
YICHYENCGKKFLDSSKLKRHFLIH
GRMZM5G885700_P01
C2H2 ZF
121
145
FVCPHEGCGKAFSLDFNLKAHMKTH
GRMZM5G885700_P01
C2H2 ZF
151
176
HVCQYPECGRRFTQESKLRAHIRAQH
GRMZM5G885700_P01
C2H2 ZF
215
240
YVCPYDGCDKAYIHEYKLNLHLKKEH
GRMZM5G885700_P02
C2H2 ZF
62
86
FLCSYEGCGKTFFDAGALRKHAHVH
GRMZM5G885700_P02
C2H2 ZF
91
115
YICHYENCGKKFLDSSKLKRHFLIH
GRMZM5G885700_P02
C2H2 ZF
121
145
FVCPHEGCGKAFSLDFNLKAHMKTH
GRMZM5G885700_P02
C2H2 ZF
151
176
HVCQYPECGRRFTQESKLRAHIRAQH
Links
Other
C2H2 ZF
family TFs
Other
Zea mays
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_26881
Aegilops tauschii
F775_26881
N
0.798
BRADI3G45590
Brachypodium distachyon
BRADI3G45590
N
0.798
LPERR02G16200
Leersia perrieri
LPERR02G16200
N
0.796
OBART02G20190
Oryza barthii
OBART02G20190
N
0.805
ORGLA02G0173200
Oryza glaberrima
ORGLA02G0173200
N
0.805
OGLUM02G20510
Oryza glumaepatula
OGLUM02G20510
N
0.805
BGIOSGA008411
Oryza indica
BGIOSGA008411
N
0.805
OLONG_002405
Oryza longistaminata
OLONG_002405
N
0.805
OMERI02G19990
Oryza meridionalis
OMERI02G19990
N
0.805
ONIVA02G22300
Oryza nivara
ONIVA02G22300
N
0.805
OPUNC02G18120
Oryza punctata
OPUNC02G18120
N
0.805
ORUFI02G21320
Oryza rufipogon
ORUFI02G21320
N
0.805
OS02G0551900
Oryza sativa
OS02G0551900
N
0.805
Pavir.Aa01761
Panicum virgatum
Pavir.Aa01761
N
0.827
Pavir.Ab01903
Panicum virgatum
Pavir.Ab01903
N
0.827
Si017660m.g
Setaria italica
Si017660m.g
N
0.822
Sb04g022470
Sorghum bicolor
Sb04g022470
N
0.822
Traes_6BL_CC009B78A
Triticum aestivum
Traes_6BL_CC009B78A
N
0.804
Traes_6DL_F47CFC6D9
Triticum aestivum
Traes_6DL_F47CFC6D9
N
0.804