CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LELG_02331
(
Lodderomyces elongisporus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
LELG_02331
T121271_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
cre-1
M01198_2.00
Neurospora crassa
CCCCRNNN
NNNYGGGG
PBM
Lambert et al.(2019)
pTH8711
0.792
0.913
RO3G_16591
M01442_2.00
Rhizopus oryzae
NCCCCRCDNN
NNHGYGGGGN
PBM
Najafabadi et al.(2015a)
pTH10231
0.792
0.848
MIG1
M00026_2.00
Saccharomyces cerevisiae
HCCCCRCN
NGYGGGGD
PBM
Badis et al.(2008)
MIG1_2106
0.758
0.739
MIG1
M01532_2.00
Saccharomyces cerevisiae
NCYCCRBNNN
NNNVYGGRGN
PBM
Zhu et al.(2009)
Mig1
0.758
0.739
MIG1
M07456_2.00
Saccharomyces cerevisiae
NCCCCRS
SYGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0337.1
0.758
0.739
MIG1
M08523_2.00
Saccharomyces cerevisiae
NCCCCRS
SYGGGGN
Misc
DeBoer et al.(2011)
YGL035C_555
0.758
0.739
MIG1
M08524_2.00
Saccharomyces cerevisiae
CCCCRSWWWW
WWWWSYGGGG
Misc
DeBoer et al.(2011)
YGL035C_654
0.758
0.739
MIG1
M10391_2.00
Saccharomyces cerevisiae
NHCCCCRSDTWWWWDDM
KHHWWWWAHSYGGGGDN
Transfac
Matys et al.(2006)
F$MIG1_01
0.758
0.739
MIG1
M10392_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MIG1_03
0.758
0.739
MIG1
M10393_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MIG1_Q6
0.758
0.739
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDK44152
C2H2 ZF
129
151
YKCPHCDKAFHRLEHQTRHIRTH
EDK44152
C2H2 ZF
157
181
HVCKFPGCSKKFSRSDELTRHVRIH
Links
Other
C2H2 ZF
family TFs
Other
Lodderomyces elongisporus
TFs
278 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG007907.1
Alligator sinensis
Alligator_sinensis_CCG007907.1
N
ENSBTAP00000049357-D1
Bos grunniens
ENSBTAP00000049357-D1
N
ENSBTAG00000020685
Bos taurus
ENSBTAG00000020685
N
ENSCJAG00000007095
Callithrix jacchus
ENSCJAG00000007095
N
ENSCJAG00000033913
Callithrix jacchus
ENSCJAG00000033913
N
ENSMMUP00000017448
Macaca fascicularis
ENSMMUP00000017448
N
ENSMMUG00000013266
Macaca mulatta
ENSMMUG00000013266
N
ENSMMUG00000018606
Macaca mulatta
ENSMMUG00000018606
N
HMGB1
Monodelphis domestica
ENSMODG00000004443
N
Myotis_brandtii_Hmgb1_10026956
Myotis brandtii
Myotis_brandtii_Hmgb1_10026956
N
ENSOGAG00000033550
Otolemur garnettii
ENSOGAG00000033550
N
ENSOGAG00000033437
Otolemur garnettii
ENSOGAG00000033437
N
ENSOGAG00000032147
Otolemur garnettii
ENSOGAG00000032147
N
ENSOGAG00000027410
Otolemur garnettii
ENSOGAG00000027410
N
ENSOARG00000005357
Ovis aries
ENSOARG00000005357
N
ENSPANG00000011772
Papio anubis
ENSPANG00000011772
N
ENSTBEG00000013995
Tupaia belangeri
ENSTBEG00000013995
N