MLOC_39001 (Hordeum vulgare)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MLOC_39001 T123586_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.770 0.750
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.765 0.795
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.765 0.795
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.765 0.750
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.757 0.795
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.756 0.727
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.756 0.727
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_39001.1 C2H2 ZF 38 60
MLOC_39001.1 C2H2 ZF 78 98

Links

Other C2H2 ZF family TFs
Other Hordeum vulgare TFs

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_028580 Acremonium chrysogenum ACRE_028580 N
AB00088.1 Alternaria brassicicola AB00088.1 N
COCC4DRAFT_87358 Bipolaris maydis COCC4DRAFT_87358 N
COCMIDRAFT_81530 Bipolaris oryzae COCMIDRAFT_81530 N
COCSADRAFT_105936 Bipolaris sorokiniana COCSADRAFT_105936 N
COCVIDRAFT_32721 Bipolaris victoriae COCVIDRAFT_32721 N
COCCADRAFT_90976 Bipolaris zeicola COCCADRAFT_90976 N
CHGG_09798 Chaetomium globosum CHGG_09798 N
CTHT_0017920 Chaetomium thermophilum CTHT_0017920 N
gw1.2.32.1 Cochliobolus heterostrophus C5 gw1.2.32.1 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
A1O9_10082 Exophiala aquamarina A1O9_10082 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
NechaG74381 Fusarium solani NechaG74381 N
fgenesh1_pg.sca_8_chr1_1_0000412 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000412 N
col-25 Neurospora crassa NCU06068 N
OIDMADRAFT_74239 Oidiodendron maius OIDMADRAFT_74239 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PODANS_5_4070 Podospora anserina PODANS_5_4070 N
MYCFIDRAFT_158158 Pseudocercospora fijiensis MYCFIDRAFT_158158 N
PTT_13765 Pyrenophora teres PTT_13765 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
SETTUDRAFT_87447 Setosphaeria turcica SETTUDRAFT_87447 N
SMAC_07447 Sordaria macrospora SMAC_07447 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
PV09_00164 Verruconis gallopava PV09_00164 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
VDAG_01189 Verticillium dahliae VDAG_01189 N