OB01G29940 (Oryza brachyantha)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OB01G29940 T124562_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.764 0.884
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.764 0.884
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.764 0.884
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.764 0.884
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.759 0.884
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.759 0.884
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.759 0.860
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.759 0.860
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.759 0.860
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.759 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G29940.1 C2H2 ZF 161 182
OB01G29940.1 C2H2 ZF 181 207

Links

Other C2H2 ZF family TFs
Other Oryza brachyantha TFs

472 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGMOG00000006541 Gadus morhua ENSGMOG00000006541 N
ENSGMOG00000011764 Gadus morhua ENSGMOG00000011764 N
mycla Gasterosteus aculeatus ENSGACG00000006680 N
myclb Gasterosteus aculeatus ENSGACG00000008503 N
ENSONIG00000015406 Oreochromis niloticus ENSONIG00000015406 N
myclb Oryzias latipes ENSORLG00000005812 N
mycla Oryzias latipes ENSORLG00000017206 N
ENSPFOG00000007778 Poecilia formosa ENSPFOG00000007778 N
ENSPFOG00000014720 Poecilia formosa ENSPFOG00000014720 N
mycla Takifugu rubripes ENSTRUG00000011538 N
myclb Takifugu rubripes ENSTRUG00000013977 N
myclb Tetraodon nigroviridis ENSTNIG00000009239 N
mycla Tetraodon nigroviridis ENSTNIG00000017476 N
ENSXMAG00000006355 Xiphophorus maculatus ENSXMAG00000006355 N