OBART08G17550 (Oryza barthii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OBART08G17550 T124652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.759 0.905
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.759 0.905
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART08G17550.1 C2H2 ZF 143 164
OBART08G17550.1 C2H2 ZF 164 189

Links

Other C2H2 ZF family TFs
Other Oryza barthii TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018149 Ailuropoda melanoleuca ENSAMEG00000018149 N
ENSAPLG00000007392 Anas platyrhynchos ENSAPLG00000007392 N
ENSACAG00000024733 Anolis carolinensis ENSACAG00000024733 N
ENSP00000326630-D1 Bos grunniens ENSP00000326630-D1 N
ZFPM1 Bos taurus ENSBTAG00000015766 N
ENSCJAG00000012840 Callithrix jacchus ENSCJAG00000012840 N
ENSCAFG00000032382 Canis familiaris ENSCAFG00000032382 N
Cmyd_10016724 Chelonia mydas Cmyd_10016724 N
ENSCSAG00000003107 Chlorocebus sabaeus ENSCSAG00000003107 N
ENSDNOG00000040837 Dasypus novemcinctus ENSDNOG00000040837 N
ENSDORG00000008940 Dipodomys ordii ENSDORG00000008940 N
ENSFALG00000006492 Ficedula albicollis ENSFALG00000006492 N
ZFPM1 Gallus gallus ENSGALG00000006099 N
ZFPM1 Homo sapiens ENSG00000179588 N
ENSSTOG00000027139 Ictidomys tridecemlineatus ENSSTOG00000027139 N
ZFPM1 Loxodonta africana ENSLAFG00000013561 N
ENSMGAG00000007619 Meleagris gallopavo ENSMGAG00000007619 N
ENSMPUG00000008220 Mustela putorius furo ENSMPUG00000008220 N
Zfpm1 Mus musculus ENSMUSG00000049577 N
Myotis_brandtii_ZFPM1_10035266 Myotis brandtii Myotis_brandtii_ZFPM1_10035266 N
ENSMLUG00000029422 Myotis lucifugus ENSMLUG00000029422 N
Ogr16761 Ophisaurus gracilis Ogr16761 N
ZFPM1 Otolemur garnettii ENSOGAG00000028472 N
ENSPANG00000005497 Papio anubis ENSPANG00000005497 N
Pvit_16331 Pogona vitticeps Pvit_16331 N
ENSPPYG00000007637 Pongo abelii ENSPPYG00000007637 N
ZFPM1 Pteropus vampyrus ENSPVAG00000005587 N
Zfpm1 Rattus norvegicus ENSRNOG00000043077 N
ENSTGUG00000007708 Taeniopygia guttata ENSTGUG00000007708 N
ZFPM1 Tursiops truncatus ENSTTRG00000014484 N