CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OLONG_016061 *(Oryza longistaminata)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	OLONG_016061	T124852_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ZAT4 M01168_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Lambert et al.(2019) pTH11142	0.786	0.844
ZAT9 M06817_2.00	Arabidopsis thaliana	YTACTWHH	DDWAGTAR	Dap-seq OMalley et al.(2016) At3g60580_col_a	0.786	0.822
ZAT1 M01167_2.00	Arabidopsis thaliana	NHRCTNN	NNAGYDN	PBM Lambert et al.(2019) pTH10246	0.785	0.800
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.769	0.667
AT5G03510 M00860_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Franco-Zorrilla et al.(2014) ZAT14	0.765	0.667
AT5G04390 M01857_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Weirauch et al.(2014) pTH7158	0.764	0.644
AT5G04390 M06819_2.00	Arabidopsis thaliana	HHHHWHCACTN	NAGTGDWDDDD	Dap-seq OMalley et al.(2016) At5g04390_col200_a	0.764	0.644
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Oryza longistaminata* TFs

166 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ASIM_0001057401	Anisakis simplex	ASIM_0001057401	N	0.000
ASU_11875	Ascaris suum	ASU_11875	N	0.000
DME_0000059301	Dracunculus medinensis	DME_0000059301	N	0.000
EVEC_0000194801	Enterobius vermicularis	EVEC_0000194801	N	0.000
PTRK_0000987600	Parastrongyloides trichosuri	PTRK_0000987600	N	0.000
RSKR_0000468300	Rhabditophanes kr3021	RSKR_0000468300	N	0.000
RSKR_0000933225	Rhabditophanes kr3021	RSKR_0000933225	N	0.000
L893_g21958	Steinernema glaseri	L893_g21958	N	0.000
SPAL_0000212800	Strongyloides papillosus	SPAL_0000212800	N	0.000
SVE_1729600	Strongyloides venezuelensis	SVE_1729600	N	0.000
SMUV_0000052701	Syphacia muris	SMUV_0000052701	N	0.000
TMUE_s0149000100	Trichuris muris	TMUE_s0149000100	N	0.000
D918_02747	Trichuris suis	D918_02747	N	0.000
TTRE_0000739201	Trichuris trichiura	TTRE_0000739201	N	0.000