PGSC0003DMG400015557 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400015557 T125825_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.809 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.809 0.783
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.777 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400040206 C2H2 ZF 46 68
PGSC0003DMT400040206 C2H2 ZF 89 111

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M438DRAFT_272404 Aureobasidium pullulans M438DRAFT_272404 I
A1O3_01599 Capronia epimyces A1O3_01599 N
PV04_08060 Capronia semiimmersa PV04_08060 I
Z519_01249 Cladophialophora bantiana Z519_01249 I
G647_02495 Cladophialophora carrionii G647_02495 I
G647_09259 Cladophialophora carrionii G647_09259 N
PV07_11766 Cladophialophora immunda PV07_11766 I
A1O5_09317 Cladophialophora psammophila A1O5_09317 I
A1O7_07588 Cladophialophora yegresii A1O7_07588 I
A1O7_09309 Cladophialophora yegresii A1O7_09309 I
W97_01247 Coniosporium apollinis W97_01247 N
A1O9_12115 Exophiala aquamarina A1O9_12115 I
HMPREF1120_08094 Exophiala dermatitidis HMPREF1120_08094 N
PV06_06985 Exophiala oligosperma PV06_06985 N
PV11_00701 Exophiala sideris PV11_00701 N
PV05_04070 Exophiala xenobiotica PV05_04070 N
PV05_05046 Exophiala xenobiotica PV05_05046 I
Z517_03173 Fonsecaea pedrosoi Z517_03173 I
PMAA_009490 Penicillium marneffei PMAA_009490 N
Z518_07309 Rhinocladiella mackenziei Z518_07309 N
PMAA_009490 Talaromyces marneffei PMAA_009490 N
TSTA_058980 Talaromyces stipitatus TSTA_058980 N