Alligator_sinensis_CCG009677.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG009677.1 T133250_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp410
M00140_2.00 		Mus musculus
CYATCCCA
TGGGATRG		 PBM
Badis et al.(2009)
Zfp410_3034 		0.804 0.957
ZNF410
M02882_2.00 		Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM		 SELEX
Jolma et al.(2013)
ZNF410_1 		0.804 0.957
ZNF410
M04435_2.00 		Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX 		0.804 0.957
ZNF410
M04436_2.00 		Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG009677.1 C2H2 ZF 169 193
Alligator_sinensis_CCG009677.1 C2H2 ZF 199 223
Alligator_sinensis_CCG009677.1 C2H2 ZF 229 253
Alligator_sinensis_CCG009677.1 C2H2 ZF 259 283
Alligator_sinensis_CCG009677.1 C2H2 ZF 289 312

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.00083_#_304 Aspergillus carbonarius fgenesh1_pg.00083_#_304 N
ACLA_087080 Aspergillus clavatus CADACLAG00007913 N
CADAFLAG00012965 Aspergillus flavus CADAFLAG00012965 N
AFUA_6G13770 Aspergillus fumigatus CADAFUAG00001560 N
ANIA_05390 Aspergillus nidulans CADANIAG00003702 N
EURHEDRAFT_529379 Aspergillus ruber EURHEDRAFT_529379 N
ATEG_03462 Aspergillus terreus CADATEAG00008621 N
Pc22g00630 Penicillium chrysogenum Pc22g00630 N
PCH_Pc22g00630 Penicillium rubens PCH_Pc22g00630 N
U727_00433740491 Penicillium solitum U727_00433740491 N