Alligator_sinensis_CCG015471.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG015471.1 T133341_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HIC2
M02902_2.00 		Homo sapiens
RTGCCMVNN
NNBKGGCAY		 SELEX
Jolma et al.(2013)
HIC2_1 		0.825 0.974
Hic1
M00141_2.00 		Mus musculus
RTGCCMNBN
NVNKGGCAY		 PBM
Badis et al.(2009)
Hic1_2816 		0.793 0.861
Hic1
M02933_2.00 		Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_1 		0.793 0.861
Hic1
M02934_2.00 		Mus musculus
RTGCCAVCN
NGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_2 		0.793 0.861
Hic1
M09003_2.00 		Mus musculus
KGGCAMCCH
DGGKTGCCM		 Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C 		0.793 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG015471.1 C2H2 ZF 402 424
Alligator_sinensis_CCG015471.1 C2H2 ZF 460 482
Alligator_sinensis_CCG015471.1 C2H2 ZF 488 510
Alligator_sinensis_CCG015471.1 C2H2 ZF 516 538
Alligator_sinensis_CCG015471.1 C2H2 ZF 544 566

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007413 Ailuropoda melanoleuca ENSAMEG00000007413 I
MZF1 Bos taurus ENSBTAG00000037581 I
MZF1 Callithrix jacchus ENSCJAG00000000218 I
MZF1 Canis familiaris ENSCAFG00000031861 I
ENSCSAG00000001584 Chlorocebus sabaeus ENSCSAG00000001584 I
MZF1 Dasypus novemcinctus ENSDNOG00000043229 I
MZF1 Equus caballus ENSECAG00000016471 I
MZF1 Gorilla gorilla ENSGGOG00000012904 I
MZF1 Homo sapiens ENSG00000099326 D
ENSSTOG00000020983 Ictidomys tridecemlineatus ENSSTOG00000020983 I
MZF1 Loxodonta africana ENSLAFG00000030303 I
MZF1 Macaca mulatta ENSMMUG00000017267 I
ENSMPUG00000008258 Mustela putorius furo ENSMPUG00000008258 I
Mzf1 Mus musculus ENSMUSG00000030380 D
ENSNLEG00000011231 Nomascus leucogenys ENSNLEG00000011231 I
MZF1 Otolemur garnettii ENSOGAG00000033237 I
MZF1 Pan troglodytes ENSPTRG00000011601 I
ENSPANG00000017028 Papio anubis ENSPANG00000017028 I
MZF1 Pteropus vampyrus ENSPVAG00000013983 I
Mzf1 Rattus norvegicus ENSRNOG00000027550 I
MZF1 Tursiops truncatus ENSTTRG00000002003 I