Alligator_sinensis_CCG015583.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG015583.1 T133342_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HIVEP2
M10101_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MIBP1_Q6 		0.825 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG015583.1 C2H2 ZF 246 268
Alligator_sinensis_CCG015583.1 C2H2 ZF 274 296
Alligator_sinensis_CCG015583.1 C2H2 ZF 1876 1898
Alligator_sinensis_CCG015583.1 C2H2 ZF 1904 1928

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR09G00580 Leersia perrieri LPERR09G00580 N
OBART09G00800 Oryza barthii OBART09G00800 N
OBART09G00910 Oryza barthii OBART09G00910 N
ORGLA09G0007200 Oryza glaberrima ORGLA09G0007200 N
OGLUM09G01100 Oryza glumaepatula OGLUM09G01100 N
OGLUM09G01200 Oryza glumaepatula OGLUM09G01200 N
BGIOSGA030218 Oryza indica BGIOSGA030218 N
OLONG_000581 Oryza longistaminata OLONG_000581 N
OLONG_023959 Oryza longistaminata OLONG_023959 N
OMERI09G00870 Oryza meridionalis OMERI09G00870 N
OMERI09G00940 Oryza meridionalis OMERI09G00940 N
ONIVA09G00830 Oryza nivara ONIVA09G00830 N
OPUNC09G00550 Oryza punctata OPUNC09G00550 N
OPUNC09G00600 Oryza punctata OPUNC09G00600 N
ORUFI09G00830 Oryza rufipogon ORUFI09G00830 N
OS09G0116050 Oryza sativa OS09G0116050 N