Alligator_sinensis_CCG018668.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG018668.1 T133406_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF143
M02899_2.00 		Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR		 SELEX
Jolma et al.(2013)
ZNF143_1 		0.826 0.988
ZNF143
M07931_2.00 		Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY		 ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford 		0.826 0.988
ZNF143
M08910_2.00 		Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A 		0.826 0.988
ZNF143
M09510_2.00 		Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN		 Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600 		0.826 0.988
ZNF143
M10247_2.00 		Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN		 Transfac
Matys et al.(2006)
V$STAF_01 		0.826 0.988
ZNF143
M10248_2.00 		Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK		 Transfac
Matys et al.(2006)
V$STAF_02 		0.826 0.988
ZNF143
M10249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STAF_Q4_01 		0.826 0.988
Zfp143
M09010_2.00 		Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A 		0.824 0.981
ZNF76
M04398_2.00 		Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX 		0.765 0.839
ZNF76
M08278_2.00 		Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV		 ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE 		0.765 0.839
ZNF76
M08856_2.00 		Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT		 Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C 		0.765 0.839
ZNF76
M04399_2.00 		Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX 		0.765 0.839
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG018668.1 C2H2 ZF 236 260
Alligator_sinensis_CCG018668.1 C2H2 ZF 266 290
Alligator_sinensis_CCG018668.1 C2H2 ZF 296 320
Alligator_sinensis_CCG018668.1 C2H2 ZF 326 350
Alligator_sinensis_CCG018668.1 C2H2 ZF 356 380
Alligator_sinensis_CCG018668.1 C2H2 ZF 386 410
Alligator_sinensis_CCG018668.1 C2H2 ZF 416 439

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF541 Callithrix jacchus ENSCJAG00000011435 I
ZNF541 Cavia porcellus ENSCPOG00000020622 N
ENSECAG00000019417 Equus caballus ENSECAG00000019417 N
ENSEEUG00000009366 Erinaceus europaeus ENSEEUG00000009366 N
ENSGALG00000022619 Gallus gallus ENSGALG00000022619 N
ZNF541 Homo sapiens ENSG00000118156 D
ENSMMUP00000019323 Macaca fascicularis ENSMMUP00000019323 N
ZNF541 Macaca mulatta ENSMMUG00000014729 N
ENSSARG00000013713 Sorex araneus ENSSARG00000013713 N
ZNF541 Sus scrofa ENSSSCG00000003119 I
ENSTBEG00000005105 Tupaia belangeri ENSTBEG00000005105 N